I’m really excited about our Editorial paper on Nature Methods about power analysis in spatial transcriptomics!
So many thanks to @A_Sottosanti e @drisso1893 💥💥💥
https://t.co/nr2RiL0jov
Check out our News & Views article on Nature Methods, where we discuss how to determine factors such as the dimension and the resolution of sampled tissue areas for optimally designing spatial omic experiments. Joint work with @drighelli and @drisso1893
https://t.co/AQEjA0cCqc
They raped a man.
They gang-raped him.
They raped him so brutally that he had to be hospitalized.
Doctors documented the injuries.
The video of the assault was leaked.
Now the rapists are free.
This is not just unlawful and immoral. It is sick!
#ThisIsIsrael
Just to let you know that our last #package SpaceTrooper for Quality Control and dedicated plots of Imaging-based Spatial Transcriptomics data is now on @Bioconductor devel.
Give it a try, and provide us any feedback/issue.
https://t.co/1YGDdwTLRC
Dario Righelli introduces SpaceTrooper at #BITS2025
An R package for QC and preprocessing of imaging-based spatial transcriptomics, integrating transcriptomic and spatial data to boost analysis quality. @drighelli
Recently, we held the first #scverse SpatialData 3-day hackathon in Basel (Switzerland), where we brought together 20 developers from the Python, R, and web communities to work on interoperability, performance, and ergonomics for spatial omics data. Here is what we worked on!
Papers submissions open for “Advancements in Biological Network Analysis”, at CIBB 2024
(19th conference on Computational Intelligence Methods for Bioinformatics and Biostatistics), September 4-6, Benevento, Italy.
Deadline: 15th May
https://t.co/2BHsYsxSNx
📣 Abstract submission is open for #EuroBioC2024 conference in Oxford 🇬🇧 Sep 4-6 https://t.co/fDkSMdIFh2 !
Submit an abstract by April 26 for
🟢 Short talk
🟢 Package demo
🟢 Poster
🟢 Contributed session
👉 Submit here https://t.co/XbYTxPzCQF
@Bioconductor Apologies for not sharing the material as a typical #Bioconductor#workshop repo, but data is huge.
Anyway, the code and the raw (https://t.co/1uKbckyUxZ) and processed data are publicly available.
As usual, I forgot to fill the @Bioconductor form for the official #speaker spotlight, so here I am telling you that today (21) at 13:30 I’ll give a short #workshop (45 mins) about Differential Accessible Regions detection in 10xGenomics #multiome#ATAC data.
#EuroBioc2023
Our last work on #SingleCellMultiModal data collection is finally out! 🎉
It has been a long journey 🚀, but it taught me a lot! 🥸
Thanks to all the co-authors (in the comments), I really enjoyed working with all of you! 🤩
https://t.co/WbKpM6RtVz
(1/5)
Together with the paper, we released the #Bioconductor#SingleCellMultiModal package, allowing to easily download and handle the collected datasets.
Just open your #rstats console and download the data with a single instruction.
https://t.co/hQghIMIj4j
(4/5)