EHolmes

I am a research scientist NOAA Fisheries and supporter of Open Science. All views my own.

[EHolmes @eeholm]

@gavin_fay @openscapes

[EHolmes @eeholm]

World Fisheries Congress is in Seattle! Please join us Monday March 4th 2-5:30pm for an Open science panel and unconf to integrate collaborative and inclusive practices into education, workforce development, and community management. Come meet friends and share ideas.

[NASAEarthdata @NASAEarthData]

Looking for an easy way to search, download, or stream @NASAEarth science data in a few lines of code? earthaccess is the library for you! https://t.co/i7MnVwlH8A

#xarray #Python #OpenScience #NSIDCDAAC #LPDAAC #CloudComputing #openscapes

[EHolmes @eeholm]

More JupyterHub Geek Week. This piece covers the steps of setting up user authentication with GitHub teams. https://t.co/4nUkrQjY93 @ProjectJupyter This is a "manual" installation (no TLJH or Z2K), which I don't recommend, but was part of a learning journey.

[EHolmes @eeholm]

Note this is part of a JHub learning journey for me. I suggest using The Littlest JupyterHub or Zero to Kubernetes. Also CentOS 8 is already end-of-life. I was trying to emulate installation on a bare metal server that happened to have CentOS 8 installed.

[EHolmes @eeholm]

More Geek Week: Setting up JupyterHubs. I am working on getting better at the steps by setting up these hubs in different ways. This piece covers the critical step of setting up https on a manual JupyterHub installation. https://t.co/8bbMJiVqA8 @ProjectJupyter

[EHolmes @eeholm]

I am working on getting more proficient at setting up JupyterHubs as a computing platform. Here is my latest learning journey. Setting up a hub on a CentOS 8 Linux server: https://t.co/WtAzTOa7JQ @ProjectJupyter Thanks @openscapes mentors for the help!

[INCOIS, MoES @incoismoes]

Today, we concluded the 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." The participants visited the various labs of #INCOIS today & interacted with our scientists!

We express our gratitude to @eeholm for facilitating the classes!

[EHolmes @eeholm]

@NOAAFish_NWFSC I have a talk at the Indian National Centre for Ocean Information Services as part of my NOAA International fellowship earlier in September.

[INCOIS, MoES @incoismoes]

🎉 Excited to announce the kickoff of #INCOIS 𝐏𝐨𝐩𝐮𝐥𝐚𝐫 𝐒𝐜𝐢𝐞𝐧𝐜𝐞 𝐓𝐚𝐥𝐤 𝐒𝐞𝐫𝐢𝐞𝐬, as a part of our 25-year celebrations!

Today, @eeholm enlightened us on "Open #Science adoption within organisations: Lessons from theories on diffusion of #innovation"

[EHolmes @eeholm]

Co-organizers were Aditi Modi, Nimit Kumar, Swarnali Majumder, Sourav Maity, Smitha BR and Uday Bhaskar. With guest speakers Ben Best, Johnny Konjarla, Myranda Shirk, Minh Phan and Sanitha K. Sivadas.

[EHolmes @eeholm]

I had an amazing 2 weeks at INCOIS teaching 58 participants from across India, Bangladesh and beyond about skills for reproducible science, R, JupyterHubs, remote-sensing data and species distribution modeling. https://t.co/SjeGzIZzIT

[INCOIS, MoES @incoismoes]

Today, we concluded the 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling." The participants visited the various labs of #INCOIS today & interacted with our scientists!

We express our gratitude to @eeholm for facilitating the classes!

[EHolmes @eeholm]

Thanks to @2i2c_org and @ESIPfed for providing support for the JupyterHub. A fully provisioned platform for cloud-native geospatial analysis in R and Python really accelerated the learning and project development. This JHub will be a boon for future training and research.

[EHolmes @eeholm]

So excited to be back at INCOIS for my NOAA International Fellowship! @NOAAFish_NWFSC @NOAAFisheries

[INCOIS, MoES @incoismoes]

Today, ITCOocean initiated a 2-week #training Course & HackWeek on #MachineLearning based #Species Distribution Modelling."

We express our gratitude to @eeholm from @NOAAFisheries for facilitating the classes!

Course Coordinators include @1nimitk and @TvsUdaya from #INCOIS!

[EHolmes @eeholm]

Can't I just pass in --env USER=myuser ? Nope, Podman will delete whatever you pass in and replaces it with "root". Note you are only root in the container; there container itself is not running as root (unlike Docker containers in the default config).

[EHolmes @eeholm]

Geek Week: More Docker for R users. Today I show you how to open rocker/rstudio with Podman on your local computer. Podman runs essentially the same but changes the user name from rstudio to root. https://t.co/9X8ZiSK0T9 #rstats

[EHolmes @eeholm]

If you don't notice that it does this, you will get "user/password" errors when you try to log in RStudio server and you'll bang your head for hours trying to solve the problem. But there is no problem, just use root/password instead of rstudio/password.