Fotis E. Psomopoulos

Doing Bioinformatics and ML @ CERTH, Thessaloníki, GR, fan of training, Open Science and e-infras. Opinions my own. (he / him)

Moving to @

[Fotis E. Psomopoulos @fopsom]

The paperwork took a while but it's finally formal - I am now a tenured senior researcher @INAB_Institute! This wouldn't have been possible without the amazing people that I'm working with, or the support of my family. So, my heartfelt thanks go to them first and foremost.🙏✨🤓

[ELIXIR Europe @ELIXIREurope]

Register to ELIXIR Bioinformatics Industry Forum #EBIF2025 to join our discussion on #FederatedData’s challenges and its global impact.

📍London, UK (f2f event) 📅 17 June 2025
🔗 https://t.co/MgQluGAwqW

[AlfonsoValencia alfonsovalencia.bsky.social @Alfons_Valencia]

PUBMED is down. disaster !!
We don’t have the organization to replace it. (EuroPMC is great but not a replacement)
It is crystal clear that we cannot depend on critical systems from a single provider.
European reaction has to include science and science infrastructures.

[Fotis Karayannis @fkarayan]

@fopsom @CERTHellas, @ELIXIREurope, @eosc_everse Cooperation between academia & RIs needed to upscale rsearchers. Quick solution is the "train the trainers" approach for RI users to make the most out of the RI facilties.
#ICRI2024 Role of RIs in training the digital workforce

[OpenAIRE @OpenAIRE_eu]

We just got the 1st @eosc_everse #newsletter. Have you read it yet?

Learn all about this fascinating European project that is dedicated to establishing a common understanding of #openscience services, with a distinct focus on research software, with Project leader @fopsom who talks about the background and the goals of #EVERSE.

-Check the link below: https://t.co/bHUaYUV7ar

[EVERSE @eosc_everse]

@fairimpact_eu continues on their #NationalRoadshow towards Greece. @fopsom will represent #EVERSE at the online event on Monday, 18th November (10.30 CET). Register here to join: https://t.co/XTndmdOvIA

[ELIXIR Europe @ELIXIREurope]

📣 Join ELIXIR for a side event at #ICRI2024.
Collaborating with @AusBiocommons 🙌, we will give insight into the partnership between Australian BioCommons and ELIXIR.

📆 6 December 2024 | 🕘 9:00 - 13:00 | 🇦🇺 Brisbane, Australia

More information 👉 https://t.co/cZUiYIazMx

[Stephen Turner 🦋 @stephenturner.us @strnr]

Metagenomics-Toolkit: The Flexible and Efficient Cloud-Based Metagenomics Workflow featuring Machine Learning-Enabled Resource Allocation https://t.co/dRtKKriuCn 🧬🖥️🧪 #nextflow https://t.co/IDsLTm1MTu

[AlfonsoValencia alfonsovalencia.bsky.social @Alfons_Valencia]

Finally @GoogleDeepMind makes AF3 openly available for research - recognising community pressure and growing availability of alternative approaches.
See nature note with @MoAlQuraishi declarations.

https://t.co/oQFIUBsxQG

[SYNTHIA @IHI_SYNTHIA]

SYNTHIA PARTNER SPOTLIGHT:
Styliani Christina Fragkouli @scfragkoul and the team at @CERTHellas @INAB_Institute, Greece, are working on SYNTHIA’s technical aspects, from data management to #syntheticdata generation. Listen to her #SYNTHIA message.

#SYNTHIA_SyntheticData #SyntheticData #AIinHealthcare
#HealthcareInnovation #DataScience #DigitalHealth
#IHITransformingHealth #HorizonEU #EUResearch
@fopsom

[Natasa Anastasiadou @Nat_Anastas]

This week's contribution to the #TidyTuesday challenge: Monster Movies

R: https://t.co/i23Dhvpcjm

#Rstats #dataviz

[Natasa Anastasiadou @Nat_Anastas]

My contribution for this week's #TidyTuesday challenge on the CIA World Factbook.

R: https://t.co/bAEpEZJu6R

#dataviz #rstats

[Fotis E. Psomopoulos @fopsom]

@AMathelier @katancmm @NCMMnews #shameless_plug The @eosc_everse project aims to really capture this aspect and it would be really great to have your perspective as part of the EVERSE network https://t.co/1YFhTgzEq9. 🤓

[Fotis E. Psomopoulos @fopsom]

@AMathelier @katancmm @NCMMnews Many thanks to you and your time for your work and for sharing this - really interesting read, and I particularly like the statement that "teamwork directly impacts code quality through knowledge sharing, collective software development, and established coding standards"!

[Anthony Mathelier @AMathelier]

🧵 Bioinformatics faces a critical challenge: despite its importance, software quality often falls short due to the lack of proper development practices.

In our latest paper, we advocate for improving software quality in bioinformatics through teamwork.

https://t.co/5PxmnDSiZx

[OpenAIRE @OpenAIRE_eu]

Following the launch of the #EOSCEUNode, today’s session “Deep dive into the EOSC EU Node” featured insights from experts like Spyros Athanasiou @athenaRICinfo , Dr. Sandra Diaz Pier, Angeliki Adamaki, and Ivan Janmaat. They shared real-world use cases, from enhancing #neuroscience with HPC to optimizing #research in multi-hazard environments, and discussed the Node's potential for boosting scientific #collaboration. The session wrapped up with a lively Q&A.

Enjoy some highlights!

#EOSC #EOSCSymposium24 #ResearchCollaboration #Innovation

[Fotis E. Psomopoulos @fopsom]

Worth noting though that trustworthy AI requires equal care on all involved components of the process, and not only on the data and compute aspects. High quality software has a clear impact towards building a ML model - and I am happy that @eosc_everse specifically targets this.

[Fotis E. Psomopoulos @fopsom]

Last day of the @eoscassociation #eoscsymposium2024, with a focus on FAIR data and #AI. A gap was identified: ensuring clear provenance between models and the underlying data. A solution could be community-led standards for ML reporting, eg the @ELIXIREurope DOME recommendations.

[EVERSE @eosc_everse]

Here goes the panel discussion on #competencecentres with our project leader @fopsom

[EVERSE @eosc_everse]

@fopsom Our sister projects and we are looking forwards to your input! What needs should be addressed in your #sciencecluster and community? As EVERSE we aim to collect existing models and adopt & adapt them accordingly to #researchsoftware in each field.

[Fotis E. Psomopoulos @fopsom]

Really happy to see the aspects of quality, community driven vision, and need for reward and recognition for research #software to be raised by @moraneottilia at @eoscassociation #eoscsymposium2024! And thrilled that @eosc_everse is attempting to directly tackle those. 🤓