Top Tweets for #VariantCalling
Starts in 2 days : Register here
Register here https://t.co/IAseu1zHsk
#Bioinformatics #NGS #Sequencing #DNASeq #AlphaGenome #variantCalling #fastq #SAM #BAM #jupyterlab #virtualenvironment #commandline #linux #longreads #shortreads #illumina
Building hands-on skills & new frontiers in #Omics at the ongoing @DeptHealthRes-funded training! ๐งฌ
Participants gained practical experience in #GenomeAssembly & #VariantCalling with Dr. Neeraj, while Dr. Kriti @PremasLifeSc showcased exciting innovations in #Multiomics. ๐ป๐ฌ
Variant effect prediction usually means waiting on a slow annotation pipeline. fastVEP is a from-scratch Rust reimplementation built purely for speed: same job, dramatically less time staring at a progress bar.โก๐งฌ
https://t.co/IEEmKm1mDM
#RustLang #bioinformatics #VariantCalling
Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic. #SomaticVariants #ShortReads #LongReads #VariantCalling #Genomics #Bioinformatics #ToolsBenchmarking #ReferenceDatasets @NatureBiotech
https://t.co/a7cngfPMTM
Learning-based parallel acceleration for HaplotypeCaller. #VariantCalling #HaplotypeCaller #GATK #Genomics #Bioinformatics #BMCbioinformatics
https://t.co/L0fN9LSVDu
๐New Blog Post!
Just finished a training project on variant calling using zebrafish data from @UofGlasgow study on fisheries selection (PRJNA630223)
Walked through the full pipeline: QC โ alignment โ variant calling โ VEP annotation
#Genomics #Zebrafish #VariantCalling
A scalable distributed pipeline for reference-free variants calling. #VariantCalling #ReferenceFreeCalling #Bioinformatics #Genomics #BMCgenomics
https://t.co/5zdmcQLAKN
๐งฌ๐ Introducing NAVIP โ a new tool for predicting variant impacts more accurately! Unlike traditional methods, NAVIP considers the effect of neighboring variants within coding sequences:
https://t.co/1bZH9He4K9
#Genomics #Bioinformatics #VariantCalling 30/๐งต
Excited to share that NAVIP has been published in @PLOSCompBiol ! ๐ If you work with sequence variants, give it a read:
https://t.co/2Pfpp3WT7z
#Genomics #VariantCalling
@PuckerLab @andreas_rempel
Blackbird: structural variant detection using synthetic and low-coverage long-reads
https://t.co/RyYTwBAKaF
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
https://t.co/iadXltaeeo
#VariantCalling
Comprehensive genome analysis and variant detection at scale using DRAGEN. #GenomeAnalysis #VariantCalling #Bioinformatics @illumina #Dragen @NatureBiotech https://t.co/SGDeaHUjCQ
FindCSV: a long-read based method for detecting complex structural variations. #StructuralVariants #LongReads #DeepLearning #VariantCalling @BMCBioinfo
https://t.co/ZC32dE6AHa
Jointly benchmarking small and structural variant calls with vcfdist. #VariantCalling #SNV #StructuralVariants #Benchmarking @GenomeBiology
https://t.co/yfiEorvdOD
The Platinum Pedigree: A long-read benchmark for genetic variants. #ReferenceGenome #HumanGenome #GenericVariants #LongRead #Sequencing #Bioinformatics #VariantCalling @biorxivpreprint
https://t.co/4UPSsU8smW
miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data. #SNV #VariantCalling @nanopore #LongRead #SequenceData @BriefingBioinfo
https://t.co/a3bdpPwiCi
The poster with our work for #synth4bench is up! Come say hi and talk about #synthetic #data and #variantcalling tonight at #ECCB2024 #Poster #session at P83 at #Logomo ๐ซ๐ฎ
A huge thanks to @ECCBinfo for #Funding our work with a Travel #Fellowship ๐
Comprehensive assessment of long-read sequencing platforms and calling algorithms for detection of copy number variation. #LongRead #Sequencing #VariantCalling #CopyNumberVariations #CNVs @BriefingBioinfo
https://t.co/vApsQ9N1Di
> Variant Analysis Online Course
> 22-25 October
> https://t.co/WW0FYEBScT
Join our hands-on course to master the variant analysis, from data QC to functional interpretation of variant calls. Perfect for biologists & bioinformaticians.
#Genomics #Bioinformatics #VariantCalling
GENOMICON-Seq: A comprehensive tool for the simulation of mutations in amplicon and whole exome sequencing
https://t.co/0V3ycEibza
Comparison of read mapping and variant calling tools for the analysis of plant NGS data
https://t.co/HJtkIvSbVW
#VariantCalling #Genomics
VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing. #StructuralVariants #VariantCalling #LongReads #Sequencing
https://t.co/vuFM1EefNF
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