Top Tweets for #WikiPathways
🚨Thrilled to share our recent publication in #JCCS where we explore the intricate MSP/RON signaling pathway, a key component in conditions such as #cancer, #inflammation, & #fibrosis. Check out the manuscript and pathway map here: https://t.co/QiKaUGb1sN
#wikipathways
@mkutmon started the #vizbi cells session talking about how disease maps can help us to interpret and visualize data and its contribution to COVID-19 studies. Also she presented #Wikipathways, which is a platform for biological pathways used by the research community.
While the #Wikipathways bot for #Wikidata is in hibernation, the related wikidata items are being edited/curated, showing that data on #Wikidata lives on. This query: https://t.co/oTJm5n1rjr show the latest updates.
This was a bit cherry-picking to make a point. The licenses of both #wikipathways and the paper were truly open. This workflow is not possible with more restrictive sources.
More on this today in our upcoming discussion on Wikipedia Weekly (biodiv) https://t.co/5VOnZ2a4HC
That link points to the original pathway in #Wikipathways, which can then be explored through their #SPARQL endpoint: https://t.co/XFQTPcWsBG
In the previous example the linking abruptly end with the paper, because the authors only reference the primary source (ie. #wikipathways and #kegg), but not the individual pathway they used. In this example I was able to get a more compelling example: https://t.co/ILmXlAGFNc
SARS-CoV-2 signaling pathway map: A functional landscape of molecular mechanisms in COVID-19
https://t.co/gnHCJQDUtR
#WikiPathways #SARSCoV2 #NetPath
Updated list of rare disease pathways in the Rare Disease Portal on #WikiPathways: now 84 pathways and counting! https://t.co/etuiEx6kO5
HT/@nightrose I just stumbled upon the Wikidata Entity Explosion extension for Chrome and Firefox. This is really awesome! Once installed the extension will list metadata from #wikidata for a given site. Tested on #inaturalist and #wikipathways. awesome! https://t.co/IcKzG2nXND
Network analysis of Down syndrome and SARS-CoV-2 identifies risk and protective factors for COVID-19
https://t.co/mbi7zT73gh
#WikiPathways #SARS_CoV_2
Reactome V75 and Wikidata are in sync now. We are pleased to announce from now on our #Pathways will be routinely pushed to @Wikidata. Our sincere Thank You to @andrawaag and @scrippsresearch for their support #bioinformatics #dataviz #biology #wikidata #wikipathways
#ScienceJobs:
Postdoctoral researcher working on better COVID-19 molecular pathways and using these
Dept of Bioinformatics - @bigcat_UM, NUTRIM, Maastricht University, Netherlands
https://t.co/RDZpalgqlZ
#coviddiseasemaps #COVID19 #SARSCoV2 #WikiPathways
I am also delighted that our #Wikidata bot synchronising #Wikipathways is running as expected after a disruption in the pipeline. So the February 2020 version is now also accessible through #Wikidata
February 2020 WikiPathways update: 193 edits by 24 contributors and 3 new pathways in the last month. Accessible via #webservices and in @PathVisio and @Cytoscape. Supported by @AWSOpen.
https://t.co/Mc9WVPLE2N
#bioinformatics #openscience #opensource
Same set of transcripts and how the interpretation of #pathways can differ!
#KEGG vs #Wikipathways
#omics #transcriptomics #proteomics
Wow! #Wikipathways RDF ranking 1 at #yummydata: https://t.co/mq1l05T3PV. Brings back memories about #Void headers and #openphacts
Happy to be at the #INCOMEconference2019 this year in Berlin. Looking forward to exciting three days on Integrative Pathway Modeling. #wikipathways
Interesting workflow to visualise metabolomics data in biological pathways by Denise Slenter at #Metsoc2019 @bigcat_UM #FreeSoftwares #wikipathways #reactomepathway #neo4j #cytoscape
Eating vanilla-taste custard for breakfast lead to discussing where vanilla comes from. I spent the morning reading https://t.co/hHMT0bSghu with the direct result of a new #wikipathways entry (https://t.co/5iOtOdUWwB) and an updated #wikidata entry https://t.co/hLDWH68ixH
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