Top Tweets for #boldigger
🚨 Attention BOLDigger users: Expect some downtime following the BOLD v5 update after October 1st. I’ll work quickly to get everything back up, but need time to review all changes. Thanks for your patience! 🙏 Please repost. #BOLDigger #BOLDv5
Starting this day3 of the #EukaryoticMetabarcoding23 course with @buchner_dominik introducing his tool #BOLDigger - a Python package to identify and organise sequences with the Barcode of Life Data systems
Check it out: https://t.co/6049GSOwWt
Update on #BOLDigger: For the selection of any type of top hit all database entries containing punctuation and/or numbers will be ignored. This leads to cleaner taxa lists and less data cleaning needed for final analysis 🤓
anyone else having issues with #BOLDigger since BOLD website crashed/updated (?) some days ago? After looking for a few COI sequences (<50), BOLD stops responding. Happens both with GUI and command line version :( @buchner_dominik any help?
Updated BOLDigger and BOLDigger command-line to version 2.0.0. Selection of the top hit is now more sophisticated, check out the Readme for a detailed description of the function. Command-line version is now as quick and functional as the GUI. #BOLDigger #python #metabarcoding
Good #DNAquaNet #JourFixe today ☕️ Screening proposal options & learning from @buchner_dominik & @TillMacher about #APSCALE #BOLDigger & #TaxonTableTools #metabarcoding #opensource #pipeline Happy to learn about further software from other groups next time as well‼️
#BOLDigger update: Asynchronous requests are now implemented into #BOLDigger speeding up the identification engine 2-4 fold, depending on internet connection and database availability. Up to 1000 sequences per hour are now possible! @leeselab
#BOLDigger update: For top hits with high similarity and missing species-level assignment #BOLDigger will now query the API of BOLD to download missing data. Additional ~10% of OTUs of our test dataset could be assigned to species-level! @leeselab
Check out our metabarcoding pipeline #apscale. Finally found the time to close the gap between my demultiplexing tool and #BOLDigger. Easy to install, option to run an all-in-one analysis from demultiplexed read to the OTU/ESV table. @leeselab
https://t.co/nMmqangStm
I just gave a try to the command line version of #BOLDigger developed by @buchner_dominik for #metabarcoding OTU ID and I can't express how happy I am with how 1) easy it was to install, 2) easy it was to use, 3) great it is to have the private hits, 4) useful the flag system is.
Update on #BOLDigger #metabarcoding taxonomic assignment software 💻 It’s now available as a command-line version for easy implementation into bioinformatic pipelines. Thx for pointing out the need @DNAdataPhile @M_Hajibabaei Check here https://t.co/MfyI1zq2np @iBOLConsortium
#BOLDigger – a Python package to identify & organise sequences with the Barcode of Life Data systems @iBOLConsortium
🔓Software description: https://t.co/TxyRO8fyQx
#Biodiversity #Taxonomy #Metabarcoding @leeselab @unidue
New platform-independent software package #BOLDigger allows users to query #metabarcoding data against the BOLD sequence database in a simple fashion.
🔓Software description: https://t.co/TxyRO8xaf7
#Biodiversity #Taxonomy
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