Top Tweets for #msigdb
We've added a new interactive heatmap tool #NGCHM to https://t.co/KHDwhQfY9U from @nextgenheatmaps, allowing dynamic exploration of the expression profile of #MSigDB gene sets. Check it out on our Investigate page! #nciitcr #Bioinformatics @MDAndersonNews
GSEA 4.2.3 available now at https://t.co/KHDwhPYmLk. This is a security update removing Log4J entirely from the code base. All users are encouraged to update! #msigdb #Bioinformatics #Genomics #NCIITCR
Weโve updated #MSigDB to 7.5! This release updates gene annotations to @ensembl 105, and contains sets from the latest versions of @reactome, @WikiPathways, @news4go, @hp_ontology and more. See https://t.co/KHDwhPYmLk for details #Bioinformatics #NCIITCR
GSEA 4.2.0 just released on https://t.co/KHDwhPYmLk! There is a new correlation metric (Spearman) and a new collapse mode (Absolute Max), plus many other fixes. Updated Log4J to 2.16.0 FTW! #msigdb #Bioinformatics #Genomics
We've updated #msigdb to 7.4. This release is a small update that contains new versions of gene sets from @news4go, @reactome and a small bug fix for certain signatures in C8 that were introduced in v7.3. See https://t.co/S6kxOGgDJ6 for details #Bioinformatics
#MSigDB 7.3 out now! A new sub-collection of vaccine response gene sets courtesy of HIPC, many new cell type signatures, updates for @WikiPathways, @hp_ontology, @news4go, and @reactome. Gene annotations from @ensembl 103. See https://t.co/S6kxOGgDJ6 for details #Bioinformatics
In the past few weeks @MaayanLab added 3 new libraries to #Enrichr https://t.co/R16kYkALxY 1) >3000 user contributions (thank you); 2) TG-GATES https://t.co/Va7sKCGdOY (thank you Kamin Johnson); 3) #MSigDB hallmarks (thank you @GSEA_MSigDB). #Bioinformatics #Genomics
#MSigDB 7.2 out now! Includes new @WikiPathways and @hp_ontology gene sets! We've also updated @news4go, @reactome, and added a number of #SARSCoV2 sets among other miscellaneous changes. Gene annotations from @ensembl 101. See https://t.co/S6kxOGgDJ6 for details #Bioinformatics
#ScienceTwitter: in the lab we want to improve our #GSEA analysis for #Zebrafish and we would love some help with #MSigDB files. Do you know of good .gmt/.gmx/.grp/.xml MSigDB files for #Zebrafish? Any help is very appreciated! #AskZebrafish
๐ Thank You! ๐
Found a hit with GSEA? Want to better understand an #MSigDB gene set? Now you can easily explore related networks with MSigDB integration for @NDExProject IQuery! Check it out at https://t.co/KHDwhPYmLk from our Investigate Gene Sets tools, just look for the "query NDEx" button!
Interested in the tissue specific expression patterns of genes in a gene set? Good news! We just added the @GTExPortal v8 tissue specific #RNAseq data set to the #MSigDB Compendia expression profiles tool.
https://t.co/xM0rjL55YF #Bioinformatics
Major under-the-hood tune up with GSEA 4.0.0! Fully migrated to OpenJDK11 with a bundled JVM, no separate Java install required! New MacOS and Windows apps. Improvements to pair with #MSigDB 7.0. Better performance! Get it from https://t.co/KHDwhPYmLk #Bioinformatics #Genomics
#MSigDB 7.0: C2:@reactome now up to date with version 69. C5:GO collection rolled up with recent @news4go annotations. C1:positional sets updated to reference @GenomeRef GRCh38 (3/3) #Bioinformatics #Genomics #geneset #geneontology https://t.co/3NgqAyShLa
#MSigDB 7.0 is out now! We've made a ton of changes & we're excited to share it. Major gene set content updates at https://t.co/3NgqAyShLa. Keep reading for highlights... (1/3) #Bioinformatics #Genomics #geneset #rnaseq
Help us fund the #MSigDB! We are proposing to enhance and expand hallmark gene sets. Help our proposal by telling us how you use #MSigDB. More on https://t.co/3NgqAyShLa #Bioinformatics #Genomics #geneset
More hiring! Besides our own #msigdb Curator position, the @GenePattern group in our lab is also looking for a developer
Our lab at @UCSD is looking for a #bioinformatics programmer to develop methods for the multi-omic analysis of cancer and other diseases & disseminate them via @ProjectJupyter notebooks and @GenePattern to the worldwide #genomics community https://t.co/AdBd3ZdXYj #opendata #jobs
We're hiring! We are looking for a curator to join the @GSEA_MSigDB project in the Mesirov Lab @UCSD: https://t.co/Hev7GeytzL #msigdb #genomics #bioinformatics #jobs
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