NGCHM

Next-Generation (Clustered) Heat Maps (NG-CHM) are zoomable, pan-able clustered heat maps from which you can follow content- and context-specific links.

[NGCHM @nextgenheatmaps]

We have updated the Next-Generation Clustered Heat Maps viewer. Adds multiple detail (zoomed) views, a better way to embed NG-CHMs in web pages, and more. For more details: https://t.co/aa4IUvb9h0 #NCIITCR #heatmap

[GSEA-MSigDB @GSEA_MSigDB]

#MSigDB 7.3 out now! A new sub-collection of vaccine response gene sets courtesy of HIPC, many new cell type signatures, updates for @WikiPathways, @hp_ontology, @news4go, and @reactome. Gene annotations from @ensembl 103. See https://t.co/S6kxOGgDJ6 for details #Bioinformatics

[Davide Cittaro @daweonline]

Interesting, really.

A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data https://t.co/9ra1foUPKh

[NGCHM @nextgenheatmaps]

Use R/@RStudio to combine interactive #DimensionalityReduction plots and Next-Generation Clustered Heat Maps (NG-CHM) for #singlecell (and other) data using #SingleCellExperiment (also works with #Seurat).

https://t.co/tpP2aWA0EU

#NCIITCR #RStats #Bioinformatics

[Galaxy Project @galaxyproject]

James Taylor memorial fund (JTech) and CSHL announce 2020 Biological Data Science Scholarship. 10 outstanding graduate students will be selected to attend the 2020 Biological Data Science Conference #biodata20 #usegalaxy: https://t.co/JaLUosktCB

[NGCHM @nextgenheatmaps]

The NG-CHM @RStudio containers have been updated to the latest NG-CHM viewer release. We've also created variants with preinstalled @Bioconductor and #SingleCell R packages Seurat and singleCellTK. For details see https://t.co/qj52xTuZEZ #NCIITCR.

[NGCHM @nextgenheatmaps]

NG-CHMs now have a more flexible panel interface that enables tighter integration with link outs and computational tools. See https://t.co/QiFK7HEA8S for details. #NCIITCR #HEATMAP

[NGCHM @nextgenheatmaps]

Our paper describing the interactive Next-Generation Clustered Heat Map (#NGCHM) web builder has been published: https://t.co/khi4iFdFPN
Notably, there is an interactive NG-CHM within the paper itself. #NCIITCR

[NGCHM @nextgenheatmaps]

Attending iBright2019 https://t.co/Gy1weyjsdh? Please visit our poster showing the “Bioinformatics TurDuckEn”, a Next-Generation Clustered Heat Map (NGCHM) containing an @RStudio instance containing an #RSHINY app. The app can access the #NGCHM data as a virtual input. #NCIITCR

[NGCHM @nextgenheatmaps]

John Weinstein opening our hands-on workshop on Next-Generation Clustered Heat Maps at the NIH. #NGCHM #NCIITCR https://t.co/bCAeKivzsE

[NGCHM @nextgenheatmaps]

The latest release of the Next-Generation Clustered Heat Map viewer includes many improvements. Read more at https://t.co/QiFK7HEA8S #NGCHM #NCIITCR

[NGCHM @nextgenheatmaps]

The Next-Generation Clustered Heat Map tool for #galaxy was upgraded recently. Details at https://t.co/KMODpnixyT #nciitcr #ngchm

[Robert Grossman @bobgrossman]

Please don't:

1. Refuse to expose any API and instead require all users to use your platform.

2. Bring data from other resources and platforms into your system, but don’t let your data out.

3. Refuse to interoperate with other systems w/ the same security and compliance

[Globus @globus]

Interested in Globus for Box? Contact us! https://t.co/5q8r9oa8sB

[Juli Klemm @jklemm]

Stop by the #NCIITCR booth at #ISMB19 next week to learn about the open source cancer informatics tools supported by the program and the funding opportunities for supporting your own @NCIDataSci

https://t.co/m1kgHmoJnF

[NGCHM @nextgenheatmaps]

First tweet I see after responding to a user's email 🙂.

[Juli Klemm @jklemm]

How to support open-source software and stay sane https://t.co/Bl6DuWLpOv #nciitcr @NCIDataSci

[Juli Klemm @jklemm]

.@ecerami and Niki Schultz describe the growing "ecosystem" in @cbioportal including collaborations with @igvteam @CIViCdb @nextgenheatmaps @Bioconductor and Cancer Digital Slide Archive #nciitcr19 @NCIDataSci

[Bradley Broom @BradleyBroom]

We created a simple tool that uses Google text-to-speech to create an audio narration for a video file (such as for a tutorial video): https://t.co/3w5BHapXTJ #NCIITCR