IGV Team

Official Twitter account of the Integrative Genomics Viewer (IGV)

[IGV Team @igvteam]

@riyavsinha @anshulkundaje @arjunmk1 I could try to port your javascript, someone needs to open an issue in the IGV desktop repo though or I will forget. https://t.co/jBdo2Pb80W

[Robert Aboukhalil @RobAboukhalil]

We now have an IGV tutorial on https://t.co/3DKXXBcWO5!

Learn to visualize genomics data and distinguish real variants from artifacts:

➡️ https://t.co/gpNpv8JdZw

[CNVpytor @cnvpytor]

pytor update !! thanks to @igvteam, both igv.js and igv-webapp now support pytor files, making it easier to visualize your data. Check out https://t.co/Qe9iFdMko7 to try it out using a pytor file.
See: https://t.co/FB3R1KO2ll
#igv #pytor #cnvpytor #cnv

[IGV Team @igvteam]

IGV 2.16.0 is released with options to color bases from @PacBio alignments by SMRT kinetic values. Thanks to Chris Saunders @ctsa11 for the PR. Details here https://t.co/iWKsPI25NH

[IGV Team @igvteam]

Published in Bioinformatics "igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)". https://t.co/q6x6mSYTGF #nciitcr #Bioinformatics

[IGV Team @igvteam]

@Phil_A_Richmond See reply just tweeted. Open a git issue or use the igv-help forum for further discussion.

[IGV Team @igvteam]

@Phil_A_Richmond For more info see the igv github readme, scroll to bottom: https://t.co/xqYvuah9Fl

[IGV Team @igvteam]

IGV 2.14.0 is released with a new coloring mode for 5-Methylcytosine modifications. See https://t.co/NmyCYTj97X

[IGV Team @igvteam]

igv-reports (https://t.co/rbgAL5dR6l) now supports multi-locus views for structural variants. Example report here: https://t.co/dgoS8iXOiy. Thanks to @devangvang for this PR.

[IGV Team @igvteam]

@gsherloc Very nice. For an alternative approach, which yields "live" views as opposed to screenshots, checkout igv-reports. https://t.co/9OKRZN3zTP

[IGV Team @igvteam]

Updated IGV url https://t.co/Ha2Qs34wDV

[IGV Team @igvteam]

IGV desktop and igv-webapp have been updated with the #T2T CHM13 v2.0 assembly. Thanks to Maximilian Haeussler and the track hub team(s) at UCSC. https://t.co/qV5bi3Vejy

[IGV Team @igvteam]

igv-notebook for Colab and Jupyter is now in pypi, "pip install igv-notebook". Example notebook https://t.co/tC9Dq7hreD

[IGV Team @igvteam]

igv.js can now be used in Colab notebooks https://t.co/tC9Dq7hreD

[IGV Team @igvteam]

IGV Desktop can now interact with an app wrapping the JBrowse Circular View component to explore long range interactions. See https://t.co/OIXK6r83mK for details.

[Robert Aboukhalil @RobAboukhalil]

Excited to announce https://t.co/rOQU0cfgNI, an app to explore your genomics cloud data! Hook up existing S3 buckets, inspect data without downloading it, and collaborate in real-time with multiplayer IGV 🧬 ⛅

Check out the trailer: https://t.co/eQmCnAqwDD

[IGV Team @igvteam]

Attention: If you are running an older version of IGV, versions from 2.4 to 2.11.8 were shipped with log4j2, which is subject to the "Log4shell" vulnerability. We recommend you update IGV to the latest version, 2.11.9, which does not use log4j. https://t.co/ijFsDJ4UcE

[IGV Team @igvteam]

@RobAboukhalil Very cool.

[IGV Team @igvteam]

igv.js and igv-web (https://t.co/x6DA91nQeq) now support viewing alignments (BAM) and variants (VCF) from htsget servers.