#nullranges - Twitter Hashtag

about 4 years ago

Thanks again to the folks on the #nullranges channel including @ericscottdavis1 @dphansti @mikhaildozmorov @_StuartLee @timtriche and to the users who came to my and Eric's #BioC2022 nullranges workshop: https://t.co/3VfgTPUKvp Funding: @cziscience #EOSS

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Michael Love @mikelove

about 4 years ago

Development and conference attendance for Eric and Wancen was supported by an EOSS award from @cziscience. Contributions from @dphansti, @mikhaildozmorov, @_StuartLee, @timtriche and other members of #nullranges slack channel Previously described here: https://t.co/L4dchJBg1c

Michael Love @mikelove

over 4 years ago

Hence was born {nullranges} which sits in between these packages like so. We restricted our focus to only creation of null sets -- it does not do enrichment analysis, as we found that was better handled by the plyranges flexible grammar (didn't try to wrap it all into one)

mikelove's tweet photo. Hence was born {nullranges} which sits in between these packages like so. We restricted our focus to only creation of null sets -- it does not do enrichment analysis, as we found that was better handled by the plyranges flexible grammar (didn't try to wrap it all into one) https://t.co/7SgiX1t8jl

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Michael Love @mikelove

over 4 years ago

These last two pieces of functionality are being written up now. We have four vignettes (see "Articles" at link) on incorporating these into genomic enrichment analyses -- if you're interested, please reach out to us on GH or Bioc Slack #nullranges https://t.co/UGOAHf20QX

mikelove's tweet photo. These last two pieces of functionality are being written up now. We have four vignettes (see "Articles" at link) on incorporating these into genomic enrichment analyses -- if you're interested, please reach out to us on GH or Bioc Slack #nullranges

https://t.co/UGOAHf20QX https://t.co/QzCi303QuE

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Michael Love @mikelove

over 4 years ago

{nullranges} has two branches of functionality: 1. block bootstrapping of ranges, written by @WancenM 2. matching ranges based on covariates, written by @ericscottdavis1 and @dphansti Help also from the #nullranges channel including @mikhaildozmorov @_StuartLee @timtriche

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Michael Love @mikelove

almost 5 years ago

Finally, check out the rest of the #nullranges vignettes here, including beautiful examples from @ericscottdavis1 and @dphansti on creating matched ranges / matched interaction sets: https://t.co/nGwoFBk5es

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Michael Love @mikelove

almost 5 years ago

Want to highlight other projects in this space: - {excluderanges} from @mikhaildozmorov - {tidybulk}, {tidyseurat} from @steman_research - {tidygenomics} from @const_ae + Bioc community slack channels, feel free to post to us there: #tidiness_in_bioc and #nullranges

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Michael Love @mikelove

almost 5 years ago

It's mid December and your co-authors aren't responding to your emails, time to try out a new framework for analyzing genomic data🎄 New #plyranges + #nullranges workflows, 🧵 below with @WancenM @_StuartLee @ericscottdavis1 @dphansti et al

mikelove's tweet photo. It's mid December and your co-authors aren't responding to your emails, time to try out a new framework for analyzing genomic data🎄

New #plyranges + #nullranges workflows, 🧵 below

with @WancenM @_StuartLee @ericscottdavis1 @dphansti et al https://t.co/hoB6gi8Om3

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Michael Love @mikelove

about 5 years ago

Now in the Methodology short talks, @WancenM is talking about block bootstrapping genomic ranges for overlap analyses #bioc2021 Nullranges project is a collaboration with many groups, see #nullranges on Bioc slack channel for discussion

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