Top Tweets for #scatacseq
OmnibusX: A unified platform for accessible multi-omics analysis. #MultiOmics #DataAnalysis #RNAseq #scRNAseq #scATACseq #SpatialTranscriptomics #BMCcomputationalBiology
https://t.co/srdzF1Qlo3
Great conversations and inspiring vibes in EMBL Advanced Training Centre (ATC) @EMBLEvents — felt amazing to share my work and hear from incredible speakers!
#EESAgeing #SingleCell #Aging #EMBL #ATACseq #RNAseq #Immunology #Multiomics #scRNAseq #scATACseq
🔬 Your immune system doesn’t just weaken with age—it evolves. We mapped how.
📊 We used single-cell multi-omics (RNA + ATAC) + bulk ATAC on PBMCs to build a cell-by-cell map of aging.
👉 Poster 83, EMBO | EMBL Symposium
#SingleCell #Aging #EMBL #Multiomics #scRNAseq #scATACseq
Systematic evaluation of single-cell multimodal data integration for comprehensive human reference atlas | bioRxiv | from @eli_mereu and @jzlevin labs https://t.co/hyhjuVnzAc #singlecell #scATACseq
Funding academic research is essential for advancing human health. Today, we published our NIH-funded project, which annotates enhancer-to-silencer switching events in breast cancer using single-cell multi-omics #scRNAseq #scATACseq #cancerresearch https://t.co/eOPrLen2WT
More details soon, but TLDR, you can now use piscem+alevin-fry for single-cell ATAC-seq data! #ATACseq #scATACseq
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic ... https://t.co/4cpFnTNmP3 #biorxiv_bioinfo
scATAcat: cell-type annotation for scATAC-seq data. #scATACseq #CellTypeAnnotation #NARgenomicsAndBioinformatics
https://t.co/avVY2Co7XW
A few days ago we released a new multiomic dataset (#scATACseq and #scRNAseq) across teh same first six key stages of embryogenesis (10 to 24 hpf). "Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish Embryogenesis"
https://t.co/5wBZ6XAYaa
https://t.co/9vv6S7h3w2
https://t.co/PKylAhIC6Y
📡🧵 Excited to release two #bioRxiv preprints!
The first preprint is: "Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish Embryogenesis"
https://t.co/5wBZ6XAYaa
We present a comprehensive time-resolved single-cell multiomic atlas of zebrafish development. Integrating scATAC-seq and scRNA-seq from 94,000+ cells, we map gene regulatory networks across six key stages of embryogenesis (10 to 24 hpf).
A major accomplishment by @yangjoonkim co-led by @Merlin_Lange with experiments by @Shruthi94Vijay #Zebrahub-Multiome is a sequel to https://t.co/hPFARKa8Oi, our transcriptomic and imaging atlas of zebrafish development.
#zebrafish #development #ATACseq #cell #biology #sequencing @czbiohub #CZBiohubSF @cziscience
Note: We sent two preprints simultaneously yesterday, and this is the first one to come out... I will append to this thread when the second one is out...
We are excited to share 𝘀𝗰𝗔𝗧𝗔𝗰𝗮𝘁, a great new tool for annotating #scATACseq data!
Check out the thread for more details ⬇️
I am happy to share that my PhD work, 𝘀𝗰𝗔𝗧𝗔𝗰𝗮𝘁🐈, is now out in #nargab @VingronLab
https://t.co/xMTd9Yc372
#scATAcat #epigenomics #singlecell
Here is a 🧵👇
Our new #singlecell #datavisualization method is now in GigaScience! With our interactive tree, you can find populations large and small in #scRNAseq, #scATACseq, #spatial, and more!
Try it: https://t.co/xAVVXpyonX
Paper: https://t.co/eFIByQbywI
Code: https://t.co/UJarN1QDMr
Going beyond standard #scRNAseq or #scATACseq workflows, sincei provides flexible signal aggregation, QC and dim. reduction methods that can work with several single-cell epigenomic assays. Sincei is available @ https://t.co/6xjpL4Bz3U. Thanks to @souf_mourra for contributing!
Controlled Noise: Evidence of epigenetic regulation of Single-Cell expression variability. #SingleCellEpigenetics #scATACseq #scRNAseq #Bioinformatics
https://t.co/tjm4o1172c
Working on #scATACseq? check this out!
#Genomics #NGS #ATAC
Systematic benchmarking of single-cell ATAC-sequencing protocols
https://t.co/bLdnLmTtp5
Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice. #HiC #Multiomic #SingleCell #3Dgenome #scRNAseq #scATACseq #OlfactoryReceptor @naturemethods https://t.co/fMV55xVPfn
Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data. #SingleCell #scRNAseq #scATACseq @BriefingBioinfo
https://t.co/m1rz4Gwijh
Are you struggling to produce #singlecell/ #scRNAseq/ #scATACseq/ #multiome data on your (emerging) #evodevo model species? Look no further - just get in touch!
P.S. I am now getting bolder & experimenting with producing #spatial data on non-models as well! Exciting times!
Don’t want to jinx anything but if all goes to plan I will close 2023 w/ a bang coz I’ve produced #singlecell #multiome data on >10 non-model species this year! Like optimize from scratch 😌
Like next week I’m running some fun mollusks, arthropods & Cnidarians! 🤞🏻✌🏻✌🏻🤞🏻#evodevo
Mapping enhancer-gene regulatory networks across mouse liver cell types.#scRNAseq #scATACseq #SpatialTranscriptomics #Bioinformatics
Single-cell spatial multi-omics and deep learning dissect enhancer-driven gene regulatory networks in liver zonation
https://t.co/ROO6wujbI4
scATAC-seq preprocessing and imputation evaluation system for visualization, clustering and digital footprinting. #scATACseq @BriefingBioinfo
https://t.co/EQtSmpTVbz
An atlas of candidate cis-regulatory DNA elements in the adult mouse brain, analyzing #scATACseq and #scRNAseq of 2.3 million individual brain cells from 117 anatomical dissections.🤯
Single-cell analysis of chromatin accessibility in the adult mouse brain
https://t.co/FDe2tx1wdO
scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor. #scATACseq #R #NARgenomicsAndBioinformatics
https://t.co/Hkm1INjWSp
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