Samtools Team

Announcements of samtools, bcftools, and htslib releases. See the website for documentation, pointers to support and mailing lists, etc.

[Samtools Team @htslib]

Release 1.23.1 of HTSlib, SAMtools, and BCFtools is now available from GitHub. This fixes crashes that could occur when reading malformed CRAM or GZI files. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.23 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See https://t.co/oBT6uOdrj7 for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.22.1 of HTSlib and SAMtools is now available from GitHub. This fixes crashes that could happen when reading malformed CRAM files, or when writing files with very long secondary alignments as CRAM 3.1. See https://t.co/oBT6uOcTtz for links to tarballs and release notes

[Samtools Team @htslib]

Release 1.22 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.21 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.20 of HTSlib, SAMtools, and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Oops! Samtools 1.19.1 had a bug which broke filtering on unordered BED files. This is now fixed in release 1.19.2. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.19.1 of HTSlib, and SAMtools is now available from GitHub. This fixes a regression in 1.19 that caused written CRAM files to be much bigger than necessary, along with other bugs. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.19 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOdrj7 for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.18 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.17 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.16.1 of SAMtools is now available from GitHub. This fixes some bugs in the new template-coordinate sort feature. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.16 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uNVi4Z for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.15.1 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes. This fixes bugs found in the 1.15 release, including a regression in the samtools view --region-file option.

[Samtools Team @htslib]

Release 1.15 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.14 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.13 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Samtools Team @htslib]

Release 1.12 of HTSlib, SAMtools and BCFtools is now available from GitHub. See https://t.co/oBT6uOcTtz for links to tarballs and release notes.

[Petr Danecek @petrdanecek]

Play it again, SAM(tools)?
https://t.co/CqVheWGrOU

[Petr Danecek @petrdanecek]

HTSlib paper https://t.co/JH8P1VWy5v