Daehwan Kim

Michael L. Rosenberg Assistant Professor at UT Southwestern

[Daehwan Kim @infphilo]

@harishk19931 @StevenSalzberg1 @lexnederbragt Here's the bioRxiv link - https://t.co/REpSRN4L1q

[Steven Salzberg 💙💛 @StevenSalzberg1]

A true graph-based genome aligner: HISAT2 and HISAT-Genotype. Align to the genome+12 million SNPs with amazing speed and accuracy, using a graph FM index. This is a technical tour-de-force from @infphilo https://t.co/bW9tV8f2zh

[UT Southwestern Medical Center @UTSWMedCenter]

UTSW's inaugural #UHackMed is underway. Learn more about the two-day event hosted by the Lyda Hill Department of #Bioinformatics https://t.co/qTZGjyJu54

[John Pace @pacejohn]

Team 8 - working on cancer problems. #uhackmed @MarkIIISystems

[Daehwan Kim @infphilo]

Bioinformatics dept. at UT Southwestern is hiring tenure-track faculty. Please apply! https://t.co/IuabjCvtw7

[Steven Salzberg 💙💛 @StevenSalzberg1]

Our new paper just went up on bioRxiv, describing a comprehensive human gene database that we've been working on for more than 2 years now @elapertea https://t.co/OHiGDR7sFt

[Daehwan Kim @infphilo]

Looking for a postdoc to develop computational methods for analyzing sequencing data - please find me at #bog18 to discuss it. https://t.co/HWF0NGrS9q

[Daehwan Kim @infphilo]

@strnr @StevenSalzberg1 @biorxiv @BenLangmead @ckingsford As HISAT-genotype's results exactly match those reported by Kourami, there is no need to put the same results twice.

[Daehwan Kim @infphilo]

@BenLangmead @StevenSalzberg1 @biorxiv Thank you! :-)

[Steven Salzberg 💙💛 @StevenSalzberg1]

Just out on @bioRxiv
HISAT-genotype and HISAT2: graph-based alignment to the human genome with millions of SNPs integrated, PLUS a new genotyping platform for HLA typing and more https://t.co/dl6WCR6qzX @infphilo @BenLangmead

[Steven Salzberg 💙💛 @StevenSalzberg1]

Wake up people: using outdated scientific software is not OK https://t.co/Jx9GYEVoTJ with comments from @lpachter

[Steven Salzberg 💙💛 @StevenSalzberg1]

https://t.co/OcBv0a2g5V Kraken 1.0 for #metagenomics analysis just released. Thanks @DerrickEWood and Jennifer Lu!

[Steve Mount @ongenetics]

A tenure-track faculty position in Cell Biology and Molecular Genetics at the University of Maryland.
Great place!
https://t.co/fHkN6aEbeC

[Daehwan Kim @infphilo]

@ZaminIqbal Not yet, I plan to deposit a preprint of HISAT-genotype by the end of November.

[Daehwan Kim @infphilo]

@ZaminIqbal Kourami assembles exons of HLA genes while HISAT-genotype assembles full-length sequences of HLA genes including exons and introns.

[Daehwan Kim @infphilo]

Looking for postdocs to join Kim lab https://t.co/oDjWrInhbF working on graph alignment, HISAT3, and other projects. https://t.co/IpdyhEsKuc

[LabWorm @TheLabWorm]

Featured this week: HISAT2, for mapping next-generation sequencing reads to human genomes. Like it? Vote it up! https://t.co/laxtuRQDGB

[Daehwan Kim @infphilo]

Pavian, cool interactive visualization platform for analyzing metagenomic data developed by my officemate @fbreitw https://t.co/t9TAfF46UL

[Daehwan Kim @infphilo]

@bcantarel No, I'm about to start applying. Thanks for letting me there are positions still available, I'll apply to UTSW this week!

[Daehwan Kim @infphilo]

@bcantarel my plan for gene fusion support in HISAT2 is to work with students or postdoc once I have my own lab.