Jonas Paulsen

Associate Professor at University of Oslo. Interested in bioinformatics, 3D Genome, epigenetics, genomics and gene regulation. Postdoc positions available.

[Jonas Paulsen @jonnings]

Struggling with Hi-C data? Meet hictk: a new toolkit revolutionizing working with .hic and .cool files! Seamless interoperability for a range of file formats, and blazing-fast performance, 3D genomics has just gotten a lot easier. Developer: @robomics https://t.co/IPD8PctISc

[Anthony Mathelier @AMathelier]

🚨 PhD in Bioinformatics & Gene Regulation 🚨
Join the Bioinformatics in Life Science initiative through a multidisciplinary project to unravel gene regulation from DNA to proteins, co-supervised by @eviledv @jonnings and me @biovitenskap @NCMMnews!

https://t.co/q3bZfWuDel

[Geir Kjetil Sandve @SandveGeir]

Finally biologists can also use numpy (array programming). Handling e.g. DNA and protein sequences with convenience and speed, like physicists and machine learners for decades have worked with numerical data: https://t.co/06MjAmBINx (1/3)

[Iannis Aifantis @iannisaifantis1]

Epigenetics, gene transcription and cancer research X afficionados...Don't forget to register and join our exciting "nuclear topology and 3D chromatin architecture in cancer" online symposium taking place on Monday November 11th! Organized by @jane_skok and @LabMelnick #epigenetics #cancer @NYUGSOM_Path

[Anthony Mathelier @AMathelier]

🎉 Excited to share the peer-reviewed version of our manuscript describing COBIND, a tool for revealing TF co-binding patterns using non-negative matrix factorization. Great work led by @IevaRau @NCMMnews @NordicEMBL @UniOslo_MED @UniOslo

https://t.co/XqUqTDWWdk

@NAR_Open

[Akis Papantonis @AkisPapantonis]

Our lab (https://t.co/Hmq8OJZ4ov) is still looking for a PhD candidate with a strong computational biology background and a keen interest for genome assembly and #3Dgenomics to join our subproject in the exciting EvoREST initiative on genome evolution. @yourUMG @uniGoettingen

[NCMBM @NCMBMnews]

Thanks to @Vesselinka, here is a great picture from @NCMMnews scientific retreat with @emma_haapaniemi presenting her group's research! #WomenDoScience #InclusionMatters

[Xavier Tekpli @XahTekK]

We are hiring an #engineer in the field of #molecular_biology to work with #single_cell_RNA_sequencing and #spatial_transcriptomics in the context of #breast_cancer research. Apply here: https://t.co/rqc9roqC8t

[Jonas Paulsen @jonnings]

@djost_physbiol Congrats!

[Anthony Mathelier @AMathelier]

Last couple of days to apply for this postdoc position to generate deep learning models and expand the great JASPAR and UniBind databases @NCMMnews!
It's a fantastic project in a very supportive group with outstanding collaborators!

[Inge Jonassen @ingejonassen]

Congratulations to Eivind Hovig! And thanks for great collaboration through more than two decades! You have made invaluable contributions to FUGE, @elixirnorway and Norwegian bioinformatics and cancer research!

[Helene Knævelsrud @KnVelsrud]

Associate professor of Medicine (Biochemistry) position open at Institute of Basic Medical Sciences, University of Oslo!

We are recruiting a new colleague working within the fields of chromatin biology or membrane dynamics!

@UniOslo_MED @WAutophagy

https://t.co/Sbcd5F4zyL

[Rein Aasland @rein_oslo]

Truly amazing to see the @ELIXIREurope crowd gathered for the All Hands Meeting in Dublin taking bioinformatics to new heights!

[Jonas Paulsen @jonnings]

@eviledv @ERC_Research @cbu_bergen @MSarsCentre @UiB @adnaniazi2 @jan_vreb Congratulations! Looking forward to hearing more about it!

[Anthony Mathelier @AMathelier]

We're excited to share our manuscript describing COBIND, a novel tool for the identification of transcription factor co-binding patterns with non-negative matrix factorization

https://t.co/uGLl8Maqix

1/9

[Jonas Paulsen @jonnings]

@mkuijjer @NCMMnews Congratulations!

[Jonas Paulsen @jonnings]

@Vesselinka @NCMMnews This pic is the best :)

[Jonas Paulsen @jonnings]

@AMathelier @UniOslo @NCMMnews @UniOslo_MED @unioslo_bioinfo @unioslo_mn @Oslounivsykehus Very happy to hear it!

[Genome Biology @GenomeBiology]

MoDLE, modeling of DNA loop extrusion, from @robomics, @jonnings, simulates DNA contact maps quickly, using low memory. It requires a genome region and the barrier positions in the region eg CTCF binding sites. Predicts effects of deletoins on TADS https://t.co/mYtd52KIum

[Department of Biosciences, University of Oslo @biovitenskap]

New publication: "MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions" with Roberto Rossini and Jonas Paulsen @biovitenskap. @jonnings @robomics @GenomeBiology
https://t.co/RYqHHCVn7v