Jeremie Roux

single-cell response dynamics

[Jeremie Roux @jrxlab]

@PereMarielle @LSignalife @CNRS_DR20 @inria_sophia @Insermpacacorse @ircaninstitute @IPMC_sophia @Univ_CotedAzur @INSB_CNRS Congrats Marielle !! Thanks @Asma_Chalabi_ and @BenjaminBian8 !!

[Marielle Péré @PereMarielle]

Proud to have won a Poster Prize at the 5th @LSignalife Meeting for our work at the @jrxlab on #MachineLearning in #SingleCell experiments to identify targets in #immunoOncology ! @CNRS_DR20 @inria_sophia @Insermpacacorse @ircaninstitute @IPMC_sophia @Univ_CotedAzur @INSB_CNRS

[Jeremie Roux @jrxlab]

Big thanks to Frédéric Cazals @3IAcotedazur, @DorianMazauric, @AgnesGenomiX, @PereMarielle, @Asma_Chalabi_, @BenjaminBian8, all done @Univ_CotedAzur, @inria_sophia, @IPMC_sophia, @ircaninstitute, with #IdexUCA, #UCAjedi, @LSignalife, @CNRS_DR20, @CanceropolePACA, @INSB_CNRS.

[Jeremie Roux @jrxlab]

Welcome GeNetRank ! it goes well with fate-seq to prioritize the molecular factors regulating cell response dynamics and drug mechanisms of action.

@PLOSONE: Gene prioritization based on random walks with restarts and absorbing states, ...
https://t.co/aLnzafHNOE

[Jeremie Roux @jrxlab]

We also just shared our protocol for fate-seq @STARProtocols to isolate drug-tolerant cells in their transient state of sensitivity, right before profiling

Coupling live-cell imaging and in situ isolation of the same single-cell ...
https://t.co/O3CGfA7zQ6

[Jeremie Roux @jrxlab]

Congrats @Asma_Chalabi_ flash talk #ICSB2022, go see her poster 193 !
detecting dynamic features in cell trajectories

[Jeremie Roux @jrxlab]

Go @PereMarielle !!! presenting her latest work at #ICSB2022. Really nice session !

[Mohit Kumar Jolly @mkjolly15]

Excited to co-organize a session at @smb__2022 @ecmtb2022, with @yogeshgoyallab on single-cell trajectories of cancer drug resistance. Look forward to exciting talks by @BalashaLab @jrxlab @MaalavikaP @sidharthagoyal @UCI_CMCF @carcarortega. @molab_uclm @SMBMathOnco @CancerSysBio

[Jeremie Roux @jrxlab]

Big thanks to Madalena Chaves, Luis Pereira, @Inria & @Inserm PhD fellowship “Médecine Numérique”, #IdexUCA, #UCAjedi, @LSignalife, @AgenceRecherche, @CNRS_DR20, @CanceropolePACA, @INSB_CNRS and @Institut_cancer.

[Jeremie Roux @jrxlab]

Very happy to share our new paper made in @Univ_CotedAzur, @ircaninstitute, @inria_sophia ...

Two-level modeling approach to identify the regulatory dynamics capturing drug response heterogeneity in single cells, @SciReports

https://t.co/wXFRakULGa

[Jeremie Roux @jrxlab]

We utilize single-cell dynamics to identify regulatory reactions that drive response heterogeneity in clonal cells. Heterogeneity-driving reactions can then be used to augment the initial model with a mechanism that leads to drug response variability of non-genetic origins.

[Jeremie Roux @jrxlab]

Congratulations Stamatis !

[Stamatis Papathanasiou @stambio]

Our follow up paper on unwanted on-target side effects in germline genome editing is out. Big thanks to Rudolf Jaenisch lab for this exciting collaboration https://t.co/xHCeBb6uvI

[Jeremie Roux @jrxlab]

Signaling Dynamics and Encoding
Connecting scientists interested in single-cell signaling dynamics https://t.co/j5RCr5rIh4

InSiDE Seminar Series - 2021 Seminar schedule
https://t.co/zAcqL5pepa

[Terra Numerica @Terra_Numerica]

50 membres du collectif #TerraNumerica se sont réunis hier pour la 1ère AG 2021.

Messages d'ouverture des directions d'@Inria_sophia, @DR_20 et @Univ_CotedAzur et annonce d'un espace de 500 m2 mis à dispo par @ValbonneSA

Les projets 2021 ? C'est sur https://t.co/TmMlK3tYRW

[Terra Numerica @Terra_Numerica]

Envie de découvrir, explorer et expérimenter les sciences du numériques ? Suivez-nous et embarquez pour #TerraNumerica, un projet azuréen porté par @CNRS_DR20 @inria_sophia et @Univ_CotedAzur regroupant un bel ensemble de partenaires dont @education_gouv

[Stamatis Papathanasiou @stambio]

Very proud of this work now out in @NatureGenet. Great teamwork thank you all

[Luca Gerosa @gerosa_luca]

Happy to see our recent work on melanoma persister cells highlighted, together with other fascinating studies, in this very interesting article from Le Monde - Science & Medicine. "Cancer: faced with the threat of persistent cells, the creativity of researchers as the antidote".

[Jeremie Roux @jrxlab]

Le Monde, Cancer: la recherche axée sur l’origine non-génétique de la résistance thérapeutique. Notre approche @CellSystemsCP (@Univ_CotedAzur, @CNRS_DR20, @ircaninstitute) est citée avec les travaux de nombreux spécialistes du sujet @sorger_peter, ...

[MarineLab @lab_marine]

Thanks to "Le Monde" to cite our work on the biology of Minimal Residual Disease...

[Emma Lundberg @Prof_Lundberg]

Happy to launch the Human Protein Atlas Single Cell Classification Challenge w @kaggle @humanproteome today! Help us develop models for classification of protein patterns in single cells in microcopy images. Please RT 🙏
#ImageClassification #ML #CellAtlas https://t.co/l4bH8sZD2Q

[Jason Shepherd @JasonSynaptic]

Maybe a controversial opinion: most new techniques in science just generate huge lists, which is easy. Much harder is to MAKE SENSE of those lists...but that work is not being rewarded or funded! Let's take gene ontology as an example, the lists are often organized this way...