Jakob Vanhoefer

PhD Student in the group of @JanHasenauer @UniBonn

[Jakob Vanhoefer @JVanhoefer]

@yannik_schaelte @jherzstiftung Wow, congrats!

[Jakob Vanhoefer @JVanhoefer]

Probably one of the most stunning results of our = @JanHasenauer|s research group:

Federated learning has a HUGHE security issue: Data can recovered completely, only using the covariance function, which basically all federated learning frameworks have!
https://t.co/1ww2Qg7UKY

[Yannik Schälte @yannik_schaelte]

🎒Summer school: 𝐈𝐧𝐯𝐞𝐫𝐬𝐞 𝐩𝐫𝐨𝐛𝐥𝐞𝐦𝐬 𝐟𝐨𝐫 𝐦𝐮𝐥𝐭𝐢-𝐬𝐜𝐚𝐥𝐞 𝐦𝐨𝐝𝐞𝐥𝐬

💬With: Linda Petzold, Christiane Fuchs, @dennisprangle, @StefanEngblom, @A_Hellander

⏰August 22-26
📌@HCM_Bonn

✏️Details+register: https://t.co/PcpNqSw0F3

[Jakob Vanhoefer @JVanhoefer]

Wir = LightningPose freuen uns wirklich riesig! Vielen Dank und wir sind gespannt, wie sich das Projekt weiter entwickelt!

[Transfer Center enaCom @enaCom_UniBonn]

Prämierung des 1. Ideenwettbewerbs: Preis der Universitätsstiftung ging an Raketenstart! Der enaCom-Preis an aimed analytics! Der Sonderpreis des Digitalhub Bonn an lightning pose! Macht unbedingt weiter!

[Jakob Vanhoefer @JVanhoefer]

@DaxWerner Appreciate die Til Schweiger Referenz!

[Jakob Vanhoefer @JVanhoefer]

@cthoyt @yannik_schaelte @JanHasenauer I am not aware of an implementation either, but for fitting you anyhow only need the log-density & its derivative…

[Jakob Vanhoefer @JVanhoefer]

@cthoyt @yannik_schaelte @JanHasenauer Our favorite noise models are Laplacian- and log-normal-noise. 🚀

Laplace and log-normal (= normal for log-transformed observables) are also supported by #PEtab, and our fitting pipeline of (#AMICI and #pyPESTO). So you might want to give that a try, too. 😉

[Jakob Vanhoefer @JVanhoefer]

@cthoyt @yannik_schaelte @JanHasenauer Hey Charly,
our group did work on other noise models, since they might be biologically more plausible or robust to outliers.

https://t.co/FedBFZg5d2

[Jakob Vanhoefer @JVanhoefer]

@cthoyt And given it was from you, it was certainly not a matter of code quality etc. … 😭🥺😱😨

[Jakob Vanhoefer @JVanhoefer]

Been to one of @cthoyt's amazing introductions to python package design and it really shaped the way I write (scientific) software.

I can really recommend them (July 25, 5-8PM CEST), if you want to learn about turning python code to a clean pip-installable python package!

[Olga Vitek @olgavitek]

Our collaborator and friend @cthoyt is generously hosting a free webinar on designing reproducible projects with Python. This may be useful to many. Do join if your schedule permits. More info at https://t.co/04HnFGOqLV

[Jakob Vanhoefer @JVanhoefer]

@pixieapfelbaum Dem Astronomen Tycho Brahe ist genau das (legenden halber) passiert. Lag vielleicht auch daran, dass der Gesprächspartner der König war...

https://t.co/qEnA0weGB7

[Jakob Vanhoefer @JVanhoefer]

and apparently Nathan is called @NathanHughes__ on twitter ;)

[Jakob Vanhoefer @JVanhoefer]

Really happy to see my first first-author paper on #yaml2sbml out.

Ever had an ODE, that you wanted to simulate/fit in your standard #SBML-pipeline and wondered, how get the model to #SBML? 🚀

[JOSS @JOSS_TheOJ]

Just published in #JOSS_theOJ: 'yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML' https://t.co/vG9CxlChG4

[Jakob Vanhoefer @JVanhoefer]

Last but not least: Thank you a lot to the @JOSS_TheOJ, especially @arfon, @kelly_l_rowland and our reviewers @SirSharpest and @marouenbg for their effort and helpful suggestions that improved the paper and lead to a really pleasant reviewing experience! (Crazy, right?)🚀

[Marouen Ben Guebila @marouenbg]

Well-written piece of code for converting ODE models, comes with docs, CI, tutorials. Totally recommend 👍

[Jakob Vanhoefer @JVanhoefer]

@cthoyt Anytime ;) (and if it now would even pass unittests...)

[Jakob Vanhoefer @JVanhoefer]

@sixtus @katjadoerner Nachdem das anscheinend eine Bonner Schule ist: Soll das so?

[Jakob Vanhoefer @JVanhoefer]

This is joint work with @marta_ra_matos @yannik_schaelte @dilan_pathirana and @JanHasenauer

[Jakob Vanhoefer @JVanhoefer]

Looking forward to present our work on easy specification of #ODE-models in #SBML with #yaml2sbml at #HARMONY2021 later today.

https://t.co/UjEu9MqVlt

[COMBINE @combine_coord]

Only 5 days left until #HARMONY2021 starts. Join us for lightning talks, hacking, community sessions and a bit of vision about the fufure of #COMBINE. We're looking forward to over 130 participants! https://t.co/oMrR4Wh4iH