Kevin Lamkiewicz

Academic-Dropout, applying DataScience and AI in the real world. Views are mine.

[RNA Bioinformatics @JenaRNA]

We are looking for a Computer scientist (m/f/d)

Link to the job offer: https://t.co/kECyn6K69V

[AllGenetics @AllGenetics]

🌟 Exciting news! 🌟 @gabriellovate, a PhD student at @UniJena @viroinf will be joining @AllGenetics as an intern student this Summer. Gabriel's expertise lies in microbial #genomics and #metagenomics, with his current research focusing on viral RNA structure 🧬🦠.

[Kevin Lamkiewicz @klamkiewicz]

@EVirusBioinfC @sandratriebel_ @JenaRNA @iata_csic @VISAFELab Pleasure to talk to such an amazing community, especially at an offline event once again. And thanks to @sandratriebel_ making the preparation and presentation a joy ;)

[Kevin Lamkiewicz @klamkiewicz]

@Friedemann1 Looks like a nice place to be ;)

[Kevin Lamkiewicz @klamkiewicz]

@martinhoelzer Duuuude :)

[Kevin Lamkiewicz @klamkiewicz]

Give it a try at https://t.co/LV9hNMrPJy, and don't hesitate to open issues when needed :)

[Kevin Lamkiewicz @klamkiewicz]

PrePrint Alert: RIBAP
Back in 2018, @martinhoelzer and @lisa_barf were puzzled by a #Chlamydia core genome of only 9 genes. Turns out, most #pangenomics tools are challenged by input genomes from different species (but the same genus).
https://t.co/qYnoAbQyif

[Kevin Lamkiewicz @klamkiewicz]

However, it's very intriguing to see how RIBAP performs on metagenomic samples, where evolutionary distances are potentially large but functional conservation is still essential.

[Kevin Lamkiewicz @klamkiewicz]

@Friedemann1 That's some nightmare fuel :)

[Kevin Lamkiewicz @klamkiewicz]

What a ride. It all started back in 2018, had lots of attention until 2020 and then other things came along. But this year, @martinhoelzer and I decided to polish and finalize this one. RIBAPrePrint comes soon :)

[Martin Hölzer @martinhoelzer]

1st full release of RIBAP!

https://t.co/JSBzlIiHeb

RIBAP combines sequence homology info from Roary (kudos to the devs!) w/ clever pairwise ILP calcs (kudos to @klamkiewicz!) to produce a more complete microbial core gene set - even on genus level.

Implemented in @nextflowio

[Kevin Lamkiewicz @klamkiewicz]

@_b_meyer Getting these from mdpi articles I refused to review... But for articles with no prior context at all is a whole new level. Are they at least related to virology!?

[Kevin Lamkiewicz @klamkiewicz]

@Friedemann1 Kann ich dir meine auch zur Aufbewahrung geben? :)

[Martin Hölzer @martinhoelzer]

Everyone talking about @nanopore DNA sequencing and improving accuracy but you're more into dRNA-Seq? Check out the great work of Liuwei!

- median read accuracy ~90% w/ some species-specific exceptions
- majority Del and homopolymer errors
- C & U more likely to be erroneous
...

[Kevin Lamkiewicz @klamkiewicz]

@Friedemann1 Well, do you feel welcomed?! Then you should agree ;)

[Kevin Lamkiewicz @klamkiewicz]

Be(e) ready for todays poster session at the #GfV2023. Interested in my work, but I am not around? Most likely I am at my second poster, unfortunately being presented in the same session.

[Kevin Lamkiewicz @klamkiewicz]

@DanDepledge @GesVirologie Hoping to find you there :) having the same poster group, let's see how busy it'll be.

[Dr Meming @Dr_Meming]

M O R E

[RNA Bioinformatics @JenaRNA]

Meet Sandra, Sarah, @klamkiewicz , Muriel, Noriko, and Manja at the Annual Meeting of the @GesVirologie in #Ulm this week. https://t.co/AGbYYgGqjq