Louis Faure

Computational Biologist, Postdoc at @MSKCancerCenter

[Louis Faure @LouisFaure_]

🎓🌟 Announcement: I am thrilled to share that I have successfully earned my PhD! 🎉 I am deeply grateful to my PI @adameykolab, my colleagues, friends, and family who have supported me every step of the way. Here is a thread recapitulating my main projects I have worked on: 1/n

[Louis Faure @LouisFaure_]

@adameykolab @AlekErickson @sv_isaev @EmmaRAndersson @KharchenkoLab @ratz_michael @FrisenJonas Congrats to the team for the top work!

[Louis Faure @LouisFaure_]

🦋https://t.co/He8zUH8x4n

[Louis Faure @LouisFaure_]

@AlekErickson Exciting news congrats Alek!!

[John Lock @locusJ]

@RArgelaguet @DrAnneCarpenter Combining PHATE manifolds (https://t.co/i5W4aDESP2) from @KrishnaswamyLab, with scFates pseudotime analysis (https://t.co/MMrcjUNKpr) from @adameykolab, we see enhanced manifold resolution and structure reflective of EMT progression; not observed with non-integrated input data!

[Louis Faure @LouisFaure_]

Quite excited to talk tomorrow to the @scverse_team community about the tool I developed during my PhD! See you there 😉

[scverse @scverse_team]

Tomorrow, 2024-06-24, at 18:00 CEST will be another community meeting!

@LouisFaure_ will talk about about scFates (https://t.co/gt4WbAKMvz), a scalable Python suite for fast tree inference and advanced pseudotime downstream analysis, with a focus on fate biasing.

[Louis Faure @LouisFaure_]

@adameykolab Miss you all!

[Louis Faure @LouisFaure_]

Highly recommended! My journey to obtaining a PhD under Igor's supervision was fascinating, engaging with riveting projects and cutting-edge technologies!

[Igor Adameyko @adameykolab]

Dear Friends, we are recruiting two computational biology PhD students in our Vienna lab. We are searching for bright minds with genuine interest in biology and data analysis skills (R, Python, good knowledge of math). The projects will address the nature of cell fate decisions.

[Louis Faure @LouisFaure_]

To end this thread: a huge thank to @adameykolab & @MarilenaKastri1 for supervising me! @lallemend_f & Saida Hadjab for giving me the opportunity to work on exciting projects! @_ruslansoldatov & @KharchenkoLab for the expertise on the computational & conceptual side! 14/fin

[Louis Faure @LouisFaure_]

🎓🌟 Announcement: I am thrilled to share that I have successfully earned my PhD! 🎉 I am deeply grateful to my PI @adameykolab, my colleagues, friends, and family who have supported me every step of the way. Here is a thread recapitulating my main projects I have worked on: 1/n

[Louis Faure @LouisFaure_]

In all of these studies, I used a python package I developed myself, scFates. This tool started as a translation of a R package by Ruslan, and since became a suite integrated with scanpy, allowing advanced pseudotime, branch and early genes analysis! https://t.co/JJbwepfgd8 13/n