Matthew Clark

Plant genomics researcher Natural History Museum (London), technology developer especially around genomics and next generation sequencing.

[Matthew Clark @matholomoo]

@DanNeidle @shakygobbo1981 Also SEIS/EIS schemes allow this loss crediting to CGT/IT, thus HMRC has the processes in place already to implement it more widely.

[Matthew Clark @matholomoo]

@StevenSalzberg1 @simonmaechling I only read "following" where I get a feed curated by me, of sources such as yourself, that I value reading. That largely frees you from the algorithm's dross. I'll miss your input if you leave, try ignoring the "for you" stream if you haven't tried already.

[Matthew Clark @matholomoo]

@Dowellenough @JohnFingleton1 Yes and it caused a tsunami. BTW a 3.3 is like a lorry driving past your house. UK nuclear power stations are designed for at least a 7.1 (1000x stronger). My point is scale matters e.g. a grain of rice or anvil dropping on you.

[Matthew Clark @matholomoo]

Happy to report that our @richardmleggett MARTi (Metagenome Analysis in Real Time) paper is published. We find it a useful front and backend for metagenomics (HPC or laptop). For nanopore it can pipe new reads into analysis and give live graphic results https://t.co/0NSIezliOA

[Matthew Clark @matholomoo]

@ACC_IanDS @nathankw @BTP @Emmabarnett @BBCr4today @BBCMoreOrLess The BTP spokesman was clearly suggesting that if there was 10 hours of footage it took 10 hours to watch - but it takes minutes using binomial search. To your point if there are no cameras capturing the bike area (or really badly) then that can also be established quickly.

[Matthew Clark @matholomoo]

New BBSRC Transformative Research Technologies grant funded postdoc, combining CRISPR and nanopore sequencing. Based @NHM_Science ideal for a super molecular biologist, with coI @richardmleggett bringing additional nanopore bioinformatics expertise. Apply https://t.co/m1bvixGwAM

[Matthew Clark @matholomoo]

@malcolmacaulay @royalsociety @LEGO_Group @nanopore @JonHaleBio @JamesHuttonInst @UoDLifeSciences Nice. I assume it's modified from @brickopore ?

[Malcolm Macaulay @malcolmacaulay]

One of the coolest exhibits at the @royalsociety Summer School! @LEGO_Group model of @nanopore sequencing! Well done @JonHaleBio #partnershipgrants

[Matthew Clark @matholomoo]

@The__Taybor Or Geordie, but maybe that's more t-shirt than shorts. Hmm. Maybe he's a postie, they're strong on all weather shorts.

[Matthew Clark @matholomoo]

@alperakay_ I get £8,604.00 for one of the P2 solo starter pack options (below, note doesn't have to be RNA flowcells DNA also an option).

[Matthew Clark @matholomoo]

New publication on the HPC resources shared between @niabscience @JamesHuttonInst @NHM_Science @KewScience @RBGE_Science @SRUC @univofstandrews which is more efficient and aids collaboration - funded twice by @BBSRC ALERT

[Niab Science @niabscience]

NEW PAPER: UKCropDiversity-HPC: A collaborative high-performance computing resource approach for sustainable agriculture and biodiversity conservation. Read open access paper ➡️
https://t.co/KUE7DuLh6j

[Niab Science @niabscience]

NEW PAPER: UKCropDiversity-HPC: A collaborative high-performance computing resource approach for sustainable agriculture and biodiversity conservation. Read open access paper ➡️
https://t.co/KUE7DuLh6j

[Michael Giolai @michaelgiolai]

Very happy to see @annaliisalaine's & my article out in @ScienceMagazine today! We reveal that the more a plant species invests in defense, the less potential it has for growth. All made possible by lots of public data & amazing open science contributions! https://t.co/Cs2zdVN1kS

[Science at the Natural History Museum @NHM_Science]

KRILLGUARD is a @NERCscience funded project that uses genome sequencing of krill and comparisons with historic specimens at the Museum to investigate the impact of climate change on this keystone species. @matholomoo with @BAS_News and Uni of East Anglia

https://t.co/QaSxYpxrKt

[Ollie White @Ollie_W_White]

The code can be found here https://t.co/aUNHVUqmzf, https://t.co/CxrgAsfGLd, https://t.co/jcrKo6ST9C which is ready to go with all dependencies managed by Snakemake. Pease do try it out on your own data and let me know how it goes!

[Ollie White @Ollie_W_White]

A special thank you to everyone who attended the @BioGenEurope hackathon in Leiden, testing the pipeline to help their efforts to barcode over 30,000 museum collections.

[Ollie White @Ollie_W_White]

We show that the toolkit can recover mitochondrial and ribosomal genes from poorly preserved museum specimens of the gastropod family Solariellidae.

[Ollie White @Ollie_W_White]

The pipelines perform the batch assembly, annotation and phylogenetic analysis of mitochondrial genomes and nuclear ribosomal genes in a robust and scalable way using snakemake.