Microbiome Stress Project

We are building a large, open-access database to understand patterns in microbiome responses across many stressors and environments. Share your data!

[Microbiome Stress Project @MicrobialStress]

#ISME17 Come check the Microbiome Stress Project poster presented by @MicrobialMarie on Thursday and Friday! We present the methodology used to construct our open database and the first results of our meta-analysis to understand how microbiomes respond to disturbances

[Marie Simonin @MicrobialMarie]

So happy to see this paper led by @JenniferRocca1 out in @ESAEcology!
We show that rare microbial taxa emerge during community coalescence and drive the maintenance of microbial functions and diversity.
With @DrBioGC @JPWrightEcology @Alex_Washburne https://t.co/bIH0rrYuvm

[Marie Simonin @MicrobialMarie]

@ashley17061 This is also what we are aiming for with the Microbiome Stress Project @MicrobialStress. A lot of different initiatives are on-going to perform cross-system comparisons and identify common rules in microbiome assembly and function #NSFMicrobiomes https://t.co/4n1O7ut9tO

[Marie Simonin @MicrobialMarie]

Just a few days to submit your abstract for #SETAC_Europe in Dublin!
Check out our session on the responses of Environmental and Host-associated Microbiomes to Multiple Stressors. 🦠
Deadline 27 Nov!
@MicrobialStress @EcotoxicoMic

[Marie Simonin @MicrobialMarie]

Planning to go to Dublin for #SETAC_Europe in May 2020? Submit an abstract to this session on the responses of environmental and host-associated microbiomes to multiple stressors. Deadline 27 Nov! @MicrobialStress @EcotoxicoMic

[Emily Graham (she/her) @emilybonnell_g]

1 goal, 49 collabs, 39 institutions in 13 countries & growing. Join & bridge disciplinary boundaries in understanding disturbances. Open for contributions: https://t.co/WE5aiKJN69

@apeyton_smith @BenBondLamberty @colinaverill @ashley17061 @stefankrauseh2o @joeek9 @ArianePeralta

[Ferran @fromeroblanch]

Working on the effects of environmental stressors on microbial communities? you should not miss the Microbiome Stress Project, @MicrobialStress , Impressive! 😍 @MicrobialMarie @JenniferRocca1

[Marie Simonin @MicrobialMarie]

Talks on microbiome responses to chemicals will be given by Sébastien Duperron, Lara Schuijt, @elmer_tweets, Ondrej Adamovsky, @TamsynUW, @MicrobialStress, Duarte Gouveia, @akisink, Alexander Feckler, @JosselinBodilis, @RuuskanenSuvi and @NoyerMegane #SETAChelsinki @EcotoxicoMic

[Marie Simonin @MicrobialMarie]

On my way to #EGU19 for the first time! If you are a Microbial/Plant/Ecosystem Ecologist, let me know if you are going and share the time of your talks/posters with me! My talk on the impact of mountaintop coal mining on biodiversity (using eDNA) is Wednesday afternoon.

[Segata Lab @cibiocm]

Check out our paper just published in @naturemedicine on the microbiome in CRC: "Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer" https://t.co/5G1aGCqhgO By @andrew_m_thomas @paolo_manghi and many others!

[Laura Kaminsky @LmKaminsky]

So rewarding to see my undergraduate honors thesis research published in the latest @PhytobiomesJ! Soil microbiome fertilization history impacts the growth of alfalfa plants. @ryan_trexler

https://t.co/ttEpC6tsGt

[Microbiome Articles @microbe_article]

Temperature and humidity index (thi)-induced rumen bacterial community changes... - Zhong S et al. - https://t.co/Fgtr2hDgIA #microbiome

[Elin Videvall @ElinVidevall]

Another paper adding to pile of evidence that exact sequence variants (ESVs/ASVs/sOTUs) clustering methods outperform older de novo OTU methods (UCLUST and UPARSE) for 16S rRNA read inference. #Microbiome

[Prof Emma L Johnston AO FAA FTSE @DrEmmaLJohnston]

Why, why, why, can't we study multiple stressors? After decades of stressor research in urban #marine ecosystems, our systematic review of global literature (just published) found 579 studies **AND 93%** measured responses to a single stressor! https://t.co/G1wxA0Hid3

[Marie Simonin @MicrobialMarie]

The first Microbiome Stress Project (@MicrobialStress ) paper led by @JenniferRocca1 was published today in @FrontMicrobiol! We present our framework to build an open database of 16S seq and a preliminary meta-analysis of stressors impacts on microbiomes. https://t.co/4n1O7ut9tO

[FEMS @FEMSmicro]

Kandler and collaborators report how sponge #microbiome responds to #acidification.
@VicUniWgtn @aims_gov_au
https://t.co/aFCdzHTGD3
#CoralReef #ocean #ClimateChange #FEMSJournals

[Akos T. Kovacs @EvolvedBiofilm]

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

-in @ISMEJournal a collaborative paper from Institute of Soil Science, Chinese Academy of Sciences, Nanjing & @niooknaw

(with @Alex_Jousset)
https://t.co/FdzyGBF1QR

[Marie Simonin @MicrobialMarie]

Our new paper out today in @FrontMicrobiol on my PhD work @ecomicrolyon. Copper oxide nanomaterials cause significant decreases in microbial activities (respiration, nitrification, denitrification) of five contrasting agricultural soils: https://t.co/hP9723j3dB @EcotoxicoMic

[EIC Jack Gilbert @mSystemsJ]

Antimicrobial Chemicals Associate with Microbial Function and Antibiotic Resistance Indoors | mSystems https://t.co/FE61afzTBk

[Chris Schadt @ChrisInKnox]

Deforestation Impacts Network Co-occurrence Patterns of Microbial Communities in Amazon Soils https://t.co/w3VIUXIys9