Nima rafati

Bioinformatics data scienti at @NBIS @SciLifeLab Uppsala University. #genomics #RNAseq #transcriptomics #annotation #GWAS #scRNASeq #ImmigrantScientist

[Nima rafati @nimra236]

Buried treasure in junk data: discovery of sex-determination region in Atlantic herring using unmapped reads and advanced sequencing technologies. (Threads) @scilifelab @UPPMAX @NBISwe @PacBio @nanopore @illumina @samplix #Bioinformatics #genome
https://t.co/SFaV1DhtlA

[Air @Airf0rArts]

از خون جوانان وطن لاله دمیده
طراح: مهرناز بختیاری
خواننده: نوا

[Nikolay Oskolkov @NikolayOskolkov]

My interview on the goals of the Metabolic Research Group at LIOS https://t.co/qLwm7gyIJA

[Nikolay Oskolkov @NikolayOskolkov]

Please RT, two open postdoc positions in my metabolic research group:

https://t.co/4h2AzyWYY3
https://t.co/TZfhfz9eq6

[Stephen Turner 🦋 @stephenturner.us @strnr]

Weekly recap: Long-read consensus assembly with Autocycler, Progen3 for generation and functional understanding of proteins, CarpeDeam for ancient metagenome assembly, hifiasm ONT for T2T assembly of Simplex reads https://t.co/QGIJol6ZmN

[Laura Luebbert, PhD @NeuroLuebbert]

🚨We’re hiring 🚨a Bioinformatics Software Engineer to scale up viral detection pipelines on DNA- and RNA-seq data!

The role involves machine learning, lots of cloud computing, and contributions to open-source tools.

If this sounds fun or you know someone, please reach out!

[Simon Willison @simonw]

If you use "AI agents" (LLMs that call tools) you need to be aware of the Lethal Trifecta

Any time you combine access to private data with exposure to untrusted content and the ability to externally communicate an attacker can trick the system into stealing your data!

[Nima rafati @nimra236]

🚀 New on 'My Toolbox in Bioinformatics'! Check out the Bioinformatics Toolbox Tips—a curated collection of quick tricks and insights for #coding and #bioinformatics #data #analysis. 🔬💻 #DataScience #CodingTips
https://t.co/xtsly8K1wl

[Alexander Suh 서상재 @alexander_suh]

Announcing the Avian Cells /Chromosomes /Collections Symposium on Dec 09-10 in Bonn!

No registration fee and all submitted abstracts on avian development/cellbio/biobanking/evolution will receive a presentation. Abstract submission deadline November 24. https://t.co/KJFRs41xK6

[Nima rafati @nimra236]

@guilherme_diasb @quiestrho @VasquezLouella @NBISwe @scilifelab @UU_University @lunduniversity The course material is publicly available in this link
https://t.co/qjTtZ8ul3C
Herr is also an intro to RStudio
https://t.co/eoWLxpbg9w

[Nima rafati @nimra236]

A very productive and rewarding week for us as teachers teaching #R #programming . Students projects were very impressive and made us proud.

[Guilherme Dias @guilherme_diasb]

A week of R programming in Sweden 🇸🇪 (Uppsala and Lund). w/ @nimra236, Miguel Redondo, @quiestrho, @VasquezLouella, Lokesh Manoharan, Massimiliano Volpe, and Katja Kozjek.
@NBISwe @scilifelab @UU_University @lunduniversity

[Andy Clark @AndyClarkCornel]

New opening for an Assistant Professor position in Human Genetics/Genomics at Cornell! https://t.co/Q2qnumSHFA

[NBIS @NBISwe]

We are looking for new colleagues in Stockholm to our support teams. Application deadline Nov 3rd.

https://t.co/OzNkgCKkyZ

https://t.co/in6PzM96mw

[Nima rafati @nimra236]

An interesting figure reflecting the bias. However, I believe it is not merely the result of selection bias in the #NobelPrize process itself. There is potentially a deeper bias within the academic system, where #women often face more obstacles in climbing the professional ladder

[Rainer Melzer @UCDflowerpower]

GWAS for Nobel prize laureates.

[Jessica Nordlund @Jessie_no]

It is my pleasure to host @JoanCamunas at the @scilifelab The Svedberg seminar this afternoon! Please come by for his lecture "Patch-seq Profiling of Pancreatic Islet Cell Types and Cell-free
RNA Diagnostics" today Oct 7, 3:15pm at BMC C8:301 #singlecell #precisionmedicine #T2D

[PixelgenTech @PixelgenTech]

Are you attending Spatial Biology - The 2024 SciLifeLab Science Summit happening today in Uppsala? Then please make sure to stop by our posters Poster no. 5, 38, 53 & 65
@MariaGlobisch will have a presentation at 12:40
#spatialbiology #scilifelabsummit #immunecells

[Heng Li @lh3lh3]

Preprint on "BWT construction and search at the terabase scale". We can compress 100 human genomes to 11GB in 21 hours, find SMEMs with it, do affine-gap alignment and retrieve similar local haplotypes. 7.3Tb commonly sequenced bacterial genomes ⇒ 30GB https://t.co/DiRwZNHVVa

[Science Magazine @ScienceMagazine]

Researchers around the world are working together to shift the axis of scientific influence, bringing scientists of the Global South into the spotlight and building a more equitable research enterprise.

Learn more this week in Science: https://t.co/BL71kBVtom

[Nima rafati @nimra236]

🧬 Students often ask about careers in #bioinformatics, #computationalbiology, and #datascience. To guide them better, I’m gathering insights from professionals (academia and industry). Your input will shape the future of many aspiring professionals. 🙏
https://t.co/yTArj9GlEa

[Nima rafati @nimra236]

🚀 Boost Your #Data #Analysis Skills with #R! 🚀
Excited to announce the "R #Programming Foundations for Data Analysis" course by @NBISwe, @scilifelab !
📅Oct 28 - Nov 1, 2024
📍On-site: Lund & Uppsala, Sweden
🔗More info: https://t.co/P7rlUmodzf
#DataScience #Bioinformatics

[GonçaloCasteloBranco @GoCasteloBranco]

Join our lab @karolinskainst in Stockholm!!

We have PhD positions open in single-cell and spatial omics, check it out at:

https://t.co/IsfxU1r5Mi