Praveen Krishnamoorthy

Working with photons and pixels @genentech.
Believes that a microscope is a researcher's best friend.

[Advanced Bioimaging Center @ UC Berkeley @ABCUCBerkeley]

Thrilled to share our Science cover! VIPS (volumetric imaging via photochemical sectioning) eliminates working-distance limits for whole-mount, nanoscale imaging. LLSM + photodegradable hydrogel + petabyte-scale compute → axons & myelin across mouse olfactory bulbs (WT vs NPC1).

[Praveen Krishnamoorthy @prav_krish]

Hello twitter hivemind! I am looking to recruit a motivated intern for next summer to join our microscopy team at Genentech to focus on expanding our tissue clearing strategies for 3D imaging and analysis. Spread the word! 🔬

More info here- https://t.co/sEoZ6YQu1w #microscopy

[Bo Wang @BoWang87]

(1/5) Attention, Cellular Imaging Enthusiasts!

Thrilled to share that our Analysis "The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions" has been published in Nature Methods (@NatureMethods) 🎉🎉🎉

Cell segmentation is a critical component of microscopy image analysis, but existing algorithms are often specialized for particular types of images or demand users to manually set hyper-parameters, posing challenges for biologists without a strong computational background.

To address these issues, we organized an international challenge at NeurIPS 2022 to promote the development of novel cell segmentation methods that excel across a wide array of microscopy images, imaging platforms, and tissue types.

🌐 Homepage: https://t.co/jJRujwDDwl
📄 Paper: https://t.co/FgfqoSLI05
🔬Data: https://t.co/P8i77CF62b
🏅Competition website: https://t.co/PA0LrBH7sd
👇 👇👇👇

[Praveen Krishnamoorthy @prav_krish]

@JingHughes @SanjaSviben @ajpolino @bmelena48 That sparkle ✨✨✨

[Peter Sobolewski @psobolewskiPhD]

Whoa, what an achievement by @UWMadisonLOCI team:

napari-imagej
https://t.co/RGtI8H7owB

A bridge plugin between @napari_imaging (#Python) and #ImageJ (#Java)
Kudos to gselzer @ctrueden hinerm et al.!
🎉

#BioImageAnalysis #Community

[Glencoe Software @GlencoeSoftware]

Working with bioimaging data in the cloud? Generating #OMENGFF is even easier now with the release of NGFF-Converter, an open source and intuitive GUI application for generating cloud-friendly bioimaging data. Read about it and try it out here: https://t.co/4N4NV1d5f4

[Praveen Krishnamoorthy @prav_krish]

This!

[BioImaging North America @BioimagingNA]

Images to Knowledge (I2K) 2022 Registration & Poster Submissions are OPEN!!!

📅 Join us virtually May 6 , 9, and 10, 2022
🔗Register here: https://t.co/O2lcMjyDVb

Submit posters by April 27!
🔗https://t.co/4nFwTvcwuK

#I2K2022 #OpenSource @COBA_NIH @BioimagingNA

[Marius Pachitariu @marius10p]

Releasing Cellpose 2.0 today! You can now train your own state-of-the-art models in <1h, all from the GUI. Massive improvements for some images!
paper: https://t.co/BlG8mcwZNu
code: https://t.co/O7DgqGs1ax
Full story below 👇. #cellpose with @computingnature

[Microscopy Memes 🔬 @MicroscopyMemes]

Footage from inside a #confocal scan head

[napari @napari_imaging]

📣 Excited to announce 0.4.13 release of napari! 🎉

Thanks to 28 authors, 30 reviewers, and more who tested our release candidates 👏

Highlights include improvements to our 3D rendering and interactivity and support for our new plugin interface npe2 🚀

[Marine Laporte @MarineLaporte8]

“Cryo-ExM” or “how to see (almost) everything you ever dreamt of”
Want to know more ?!? Check our story out with @CentrioleLab @nikolai_klena in @naturemethods: https://t.co/OcvwpaX5u9 which combines cryo-fixation/Freeze substitution with #expansion #microscopy (#UExM).

[Praveen Krishnamoorthy @prav_krish]

Woot woot,!

[bioRxiv Neuroscience @biorxiv_neursci]

Fast and sensitive GCaMP calcium indicators for imaging neural populations https://t.co/PPmC1pnjTh #biorxiv_neursci

[Martin P. @MartinP190889]

1/21
We’re proud to present a new Deep Learning approach for Content-Aware Frame Interpolation (CAFI). Ever wanted to increase the frame rate of your images using Deep Learning? CAFI might be the right tool for you.
It’s CAFI time!
https://t.co/RAM98HU1gr
https://t.co/GUdnyNJsH0

[Praveen Krishnamoorthy @prav_krish]

This is cool! https://t.co/GeNZTyYYTr

[Aubrey Weigel @avweigel]

It’s official! Our manuscript is out today in @Nature. 🥳 Additions since our preprint include a comparison of generalists trained on all training data vs specialists trained on subsets (spoiler alert: generalists win!) and #moreGolgi!
https://t.co/JK2WFMWvmM (1/3)

[Praveen Krishnamoorthy @prav_krish]

One of my favourite plugins in #fiji just got a huge and exciting update! #MachineLearning #trackmate

[bioRxiv @biorxivpreprint]

Bringing TrackMate in the era of machine-learning and deep-learning. https://t.co/1Qr3Og2Myr #bioRxiv

[Praveen Krishnamoorthy @prav_krish]

Exciting times ahead!

[WashU Medicine Neuroscience @WashUMedNeuro]

New super-resolution microscope platform coming to Washington University Center for Cellular Imaging (@wuccilab) through grant from @NIMHgov to @JFitzpatrickWU. https://t.co/hrVxxJ9of3

[Praveen Krishnamoorthy @prav_krish]

The Delta COVID-19 strain has an R0 at a whopping 6 and is twice as infectious as the original one. But, it's never too late to get your first shot! #DeltaVariant #getyourshot

[Dr. Cyrus Shahpar Archived @cyrusshahpar46]

Big Friday just in: +857K doses reported administered over yesterday's total (vs. 600K last Friday)! This includes 563K newly vaccinated, highest since July 1. Over 190M Americans with at least one dose. 69.6% of adults with at least one dose. Let's do this!