Qian Zhu

Baylor College of Medicine, Assistant Professor, computational biologist with interests in epigenetics, single-cell, and big data

[Qian Zhu @qzhu2012]

We have published a tool called smfishHMRF https://t.co/812ti9QXmw for spatial pattern mining back in 2018. We think it is great for all kinds of spatial data. We have seen some users already started using HMRF (in Giotto or separately) and here we want to answer common questions

[Genome Biology @GenomeBiology]

Giotto: @RnDries, @qzhu2012, Yuan and co present an analysis and visualization suite for spatial expression data. It can use input from different spatial technologies, including lower resolution, and can identify cell types, neighborhoods and interactions https://t.co/J1rPsL9OUa

[Cai Lab @LongCai_Lab]

Check out our latest work of DNA seqFISH+ now published @nature https://t.co/5AAymYYUhH

[Qian Zhu @qzhu2012]

@jmuiuc @SCSatCMU @CarnegieMellon @CMUCompBio Congrats.

[Qian Zhu @qzhu2012]

Hope this is helpful to @raphg and @jmuiuc and others using the package. Looping @gc_yuan,
@RnDries.

[Qian Zhu @qzhu2012]

We have published a tool called smfishHMRF https://t.co/812ti9QXmw for spatial pattern mining back in 2018. We think it is great for all kinds of spatial data. We have seen some users already started using HMRF (in Giotto or separately) and here we want to answer common questions

[Qian Zhu @qzhu2012]

More guidelines:
https://t.co/QHdBi5dfGp

[Michael 英泉 Eisen @mbeisen]

I am excited to announce today that @eLife is transitioning to a new model based on author-driven publishing (preprints) and public post-publication peer review and curation https://t.co/bIjF6eFznz

[Cai Lab @LongCai_Lab]

Check out our latest preprint with seqFISH-based integrated spatial genomics approach to study chromosome organization, transcriptional states, and chromatin states in single cells!

https://t.co/bE8gvs0EYk

[Scott Hotaling @MtnScience]

Writing is hard. Writing concisely is especially hard yet it’s a crucial skill for scientists to develop.

This past winter, I wrote a paper to help: “Simple rules for concise scientific writing”

It’s now out and #OpenAccess: https://t.co/5ROg4Y30Pu

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[Qian Zhu @qzhu2012]

@lucapinello Congratulations!

[Canada @Canada]

Wishing Canadians far and wide a Happy Canada Day! 🇨🇦♥️🎉

[Jian Ma @jmuiuc]

Thanks @4DNucleome for the intro. Our new tool (https://t.co/k11Ir4eJ3Y) enables interactive exploration of the 3D genome by integrating genomic data, microscopy image, and 3D structures. Massive amount of work by @nimezhu @zocean636, in collab w/ @belmont_andrew @jrswedlow.👇🏽1/6

[Cell @CellCellPress]

New Article online now at Cell: Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy https://t.co/nWhdJkxlaK

[Qian Zhu @qzhu2012]

Scientists: Support for the innovation engine of American science: immigrants - Sign the Petition! https://t.co/Srnd9hR4BC via @Change

[Guo-Cheng Yuan @gc_yuan]

A kind reminder: it is only TWO days away from the demo of our updated Giotto package [https://t.co/vnPNSCFiY1] for spatial expression data analysis and visualization!
Everyone is welcome!
Time: 6/11 @ 3pm EDT
Zoom Link: https://t.co/ukOkGiuD8y

[Qian Zhu @qzhu2012]

@TheMarcelSchulz SEEK? https://t.co/NTu8zOT2QK