rah

Mass spectrometry, proteomics, machine learning, multi-omics

[rah @rah_ds]

@KrishnaswamyLab great offer! Thanks for the opportunity.
May I ask if there will be a similar Workshop at a different date? Cheers

[rah @rah_ds]

@ItaiYanai even nowadays in many places/labs technical/research assistants often get only into the paper's acknowledgement . Seems to very much depend on the PI's "philosophy".

[rah @rah_ds]

#proteomics #teammassspec #massspec #singlecell #bioinformatics

[Karl Mechtler @Karl_Mechtler]

It gives me great pleasure to announce our next Europ. Single Cell Proteomics Conference
https://t.co/P53F0quk4o
We would be delighted to receive many abstracts from students so that they have the opportunity to give their first presentation.
behalf Erwin, Fabian Manuel Fabian

[rah @rah_ds]

my Github Copilot license expired ... are there good /better alternatives for data analysis / science (python, R?) #datascience #machinelearning #python #biostatistic #bioinformatics #rstats #visualstudiocode #github

[rah @rah_ds]

how come that these days particularly in Omics a correlation of 0.4-0.5 is called "good correlation"? Or sth like "strong agreement" #biostatistics #rstats #bioinformatics #datascience

[rah @rah_ds]

@Soledad_Galli so what is the 'solution'?

[rah @rah_ds]

@tangming2005 thanks for the post. I am stressing this point a lot from an experimental design point of view. Could you give some examples, please?

[rah @rah_ds]

@SCIEXnews Any single-cell proteomics data available on this? @SCIEXnews #proteomics #singlecell #teammassspec

[Itai Yanai @ItaiYanai]

The single greatest misunderstanding about science by the public is that scientists solve problems; in reality, scientists are primarily concerned with creating them.

[rah @rah_ds]

another great lecture by @Al_Grigor @DataTalksClub explaining precision & recall (and more) super clearly. Highly recommended!
https://t.co/hsizrXHzO3

#mlzoomcamp #DataScience #MachineLearning

[rah @rah_ds]

@byu_sam @AJ_Brenes have a look at our sepsis data (>2000 plasma samples), hope not too shaloow if you're used to CPTAC ID numbers
https://t.co/jV3W6VQg90

[rah @rah_ds]

MaxQuant - The supplement of https://t.co/utZKtXdnSj contains a file with the modifications ("MaxQuant modification table for TMT 32 plex").
If not already incorporated, based on this table you should be able to put the mods into SpectroMine.
#proteomics #massspec

[Michael Steidel @michaelsteidel1]

Hi #TeamMassSpec!
Does anyone know which raw data processing tools currently support TMTpro 32?

[rah @rah_ds]

Great introductory talk on #singlecell sample prep and considerations by @ParseBio. Enjoyed watching it!
#bioinformatics #multiomics #DataScience

[Parse Biosciences @ParseBio]

🎉Next week!🎉 Don't miss part two of our #SingleCell Educational Webinar series on Aug. 6th where we'll cover experimental design and sample prep for scRNA-seq experiments.

Pacific Time Webinar: https://t.co/V0K4uo9kBj

Central European Time Webinar: https://t.co/ZeUuhd5NQj

[rah @rah_ds]

Useful guide to get started with rmarkdown in VSC on @towardsdev @medium
https://t.co/ljEzm3fCKX

#rstats #datascience #machinelearning #bioinformatics #python

[rah @rah_ds]

Started today, very excited to take part! #DataScience #MachineLearning #Python #bioinformatics

[rah @rah_ds]

Learn ML engineering in 4 months in a free online course by @Al_Grigor from @DataTalksClub

- Linear and logistic regression
- Tree-based models
- Neural networks
- Deployment with AWS, Serverless, Kubernetes

Register here: https://t.co/AijEnsNdIj

[rah @rah_ds]

@lpachter Interesting (actually worrying), that even prominent names in the (computational) single-cell field produce such output. Where does this actually have its roots? Seems to self-propagate
#bioinformatics #SingleCell

[rah @rah_ds]

@UCDProteomics yes, absolutely agreed. Unfortunately, to me it seems that replication is not sth most people aim for when publishing (not just in methods papers). I constantly wonder how this is reflected in any biological conclusions made #proteomics #TeamMassSpec #Bioinformatics

[rah @rah_ds]

@PastelBio @ProteomicsNews @BrukerMassSpec like this one https://t.co/jIxbSUO4zN

[rah @rah_ds]

@PastelBio cool stuff probably following great work @ProteomicsNews spearheaded already a few years ago. I wonder if @BrukerMassSpec would be willing to share the raw files? #proteomics #singlecell #teammassspec