RSAT

Modular software suite for the analysis of cis-regulatory elements in genome sequences 💻🖥️

[BContrerasMoreira @BrunoContrerasM]

@RSATools @NAR_Open Just published at https://t.co/f0hhsQK11U

[BContrerasMoreira @BrunoContrerasM]

The #footprintDB collection of transcription factors, motifs and regulatory sequences has just been updated, see release notes here: https://t.co/H2IpDJr19N @RSATools @jaspar_db

[RSAT @RSATools]

Check out our latest article in @NAR_Open, featuring the latest updates for @RSATools !

https://t.co/HCFyisoImC

[BContrerasMoreira @BrunoContrerasM]

Three new plant genomes added to @RSATools from @ensemblgenomes and the @NCBI:

Hordeum_vulgare.MorexV3
Lupinus_albus.CNRS_Lalb_10
Lupinus_albus.La_Amiga31

You can now use them to analyze regulatory sequences at https://t.co/ZG3r4pLHqV , enjoy!

[RSAT @RSATools]

The #RSATplants server will be down over the weekend for maintenance.
We apologize for the inconvenience this might cause, we are working to improve services.

[RSAT @RSATools]

Please welcome the latest plants added to @RSATools from @ensemblgenomes:

Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52

Olea_europaea.OLEA9.52 (cv Farga)

You can now use in you analysis of regulatory sequences at https://t.co/C0jtzFfeCZ

[RSAT @RSATools]

Upon user request, we have added the Cannabis sativa genome to https://t.co/C0jtzFfeCZ.
🌱

[RSAT @RSATools]

As requested by one of users, now the Acidovorax radicis N35 genome is available in the Prokaryotes server !🦠
Don’t hesitate to ask if you need a specific organism 👩🏽‍💻

[RSAT @RSATools]

@fikandata Thanks for the shoutout, we have a wonderful team of collaborators! 👩🏽‍💻🧑🏽‍💻👨🏽‍💻

[RSAT @RSATools]

Interested in plant biology and how to study genetic regulation?
Checkout this article from @BrunoContrerasM and @NajlaKsouri 🌱🍑

[BContrerasMoreira @BrunoContrerasM]

Well done @NajlaKsouri @EEAD_CSIC @IAMZCIHEAM

[RSAT @RSATools]

We congratulate @RSATools co-lead developer @mthomaschollier on her new position!!

[GenomiqueENS @Genomique_ENS]

We welcome @mthomaschollier as the new scientific co-leader of the genomics platform @Genomique_ENS 🎉

[RSAT @RSATools]

Just added the pineapple genome and annotation to https://t.co/C0jtzFfeCZ from https://t.co/EzxCfadwvb to Rsat::Plants
@ensembl

[BContrerasMoreira @BrunoContrerasM]

1) Today's been a hell of a day for plant #pangenomes.
In https://t.co/FSxNthxoG9 Walkowiak et al analyze up to 16 wheat cultivars to report on the global variation pool accessible to modern breeding

[Sanchit Misra (I am hiring) @sanchit_misra]

We have released bwa-mem2 v2.1 in which we address the main feedback that index of the reference was too big. The index size on disk is down by 8x and in memory by 4x with no impact on read mapping speed. #bwa-mem2 #bwamem2 #bwamem @lh3lh3 @wasim_galaxy https://t.co/AhSl0eh2qH

[Alex Cagan @ATJCagan]

If you're organising a virtual meeting and think it could benefit from being live-illustrated get in touch https://t.co/p0TOmmmmXe #scicomm #sciart

[RSAT @RSATools]

Thank to @BrunoContrerasM we now have the Tabaco Genome available in #RSATplants 🌱👩‍💻

[BContrerasMoreira @BrunoContrerasM]

Just added Nicotiana_tabacum.TN90.GCF_000715135.1.NCBI to the plants @RSATools server https://t.co/1cEwZSc1ha

[RSAT @RSATools]

Per users request, we have added the Aspergillus_sydowii.CBS593.v1.JGI genome from @MycoCosm to the Fungi server 🍄

https://t.co/1M8FvnVQEr

[RSAT @RSATools]

More than 20 years ! Good coding and documentation practices pay off 💪🏽

[Morgane Thomas-Chollier @mthomaschollier]

@slecrom Our 20 years still works 👍🏼 @RSATools, same for our friends @GenomicusDB (though few years younger) , both benefited from @IFB_Bioinfo funding few years ago

[RSAT @RSATools]

New genome installed in the Prokaryotes server 🦠
Pseudomonas_aeruginosa_GCF_001469435.2_ASM146943v3
https://t.co/1luug5Uq0X

[RSAT @RSATools]

Using RSAT or participating in our courses or workshops?
Please check out our new Code of Conduct, visible from all our servers
https://t.co/cqIUdXn7AS