Sofia Panagiotopoulou

#ML and #genomics @ArsenalBio. Previously @illumina, @10xGenomics, @Stanford CS. I mostly tweet about science. she/her.

[Sofia Panagiotopoulou @sofia_k_p]

The CompBio & ML group at @ArsenalBio is hiring! https://t.co/a4P8rsq9AB

[Sofia Panagiotopoulou @sofia_k_p]

Join us for a virtual event on the #epigenetics of #autism and neurodevelopment with @yihuizhu12 and @karineier: https://t.co/IwJ2HVEda7

[Sofia Panagiotopoulou @sofia_k_p]

The Computational Biology and ML group at @ArsenalBio is hiring! If you're excited about using your engineering and data analysis skills to meaningfully advance cell therapies against cancer, then come join us! https://t.co/4eEcJBUCbx

[David Kelley @drklly]

Check out a new method for single cell ATAC-seq analysis developed by @HY3952 and I based on the Basset model for predicting accessibility from DNA using deep conv nets https://t.co/7mnSV4NU7p

[Eric Topol @EricTopol]

How vaccination successfully took on the B.1.1.7 variant
https://t.co/tIwRwEzVXc @CellPressNews

[Anshul Kundaje @anshulkundaje]

Our paper out in @NatureGenet uses CRISPR essentiality screen data to map gene function! Another beautiful collab w/ Mike Bassik, led by the outstanding @michaelwainberg, @RoarkeKamber, @_bakshay with invaluable contribs from coauthors. 1/

[Sofia Panagiotopoulou @sofia_k_p]

@AkarshNalawade The stats on car accidents were indeed chilling...

[Sofia Panagiotopoulou @sofia_k_p]

I've binge-listened to "Invisible women" over the last couple weekends. I was aware of a lot of the biases, but some of the research was new to me. The accumulated evidence will make you angry - at least I think it should https://t.co/muWlV8Iy9s

[Sofia Panagiotopoulou @sofia_k_p]

Great read! "Visible neural network" by the @TreyIdeker group helps identify mechanisms of action of drugs and suggest synergistic drug combinations: https://t.co/rLdU01vOoY #drugdiscovery

[Sofia Panagiotopoulou @sofia_k_p]

@ArsenalBio is looking for a talented intern to join the CompBio & ML team. Come join a vibrant and diverse team, working to develop better therapies for cancer! https://t.co/RTlgB6OU13

[Sofia Panagiotopoulou @sofia_k_p]

Looking forward to the ML in Epigenomics meetup of the Bay Area Chromatin and Epigenomics community on Tue Nov 17th. Featuring @anshulkundaje! https://t.co/iBosrU1QBP

[Sofia Panagiotopoulou @sofia_k_p]

It's like those COVID-tracking maps. Except seeing the numbers go up makes you feel good: https://t.co/GUeHF4tsuO

[Kaitlin Samocha @ksamocha]

Interested in the genetic basis of rare disease?

Postdoc opening with @mehurles to link genetic + EHR data in large patient cohorts to identify novel causes of disease.

https://t.co/oEkDJdxzvp

Partnership with Genomics England + HDR UK

[Sofia Panagiotopoulou @sofia_k_p]

@sbmontgom @jenheemstra I think for some scientists this stems from the belief that we shouldn't speak about things outside our expertise. Since politics is not our expertise (so the fallacy goes), we should be quiet. But politics (or rather, policy) is about everyday life, and that's everyone's job.

[Sofia Panagiotopoulou @sofia_k_p]

@atscmc Balsamic vinegar

[Lappalainen Lab @tuuliel_lab]

Very happy and proud to present: The GTEx papers. This set of 15 papers published today describes the final phase of this 10-year effort, providing the genomics community an atlas of genetic regulatory variants and a deep dive into the biology behind it. https://t.co/hntmcfwkoH

[Sofia Panagiotopoulou @sofia_k_p]

Great review of tumor (neo-)antigens: https://t.co/DsDgGLX4Ad

[The Cancer Dependency Map @CancerDepMap]

We’re excited to share our new paper in Nature Communications (https://t.co/aDwftUF2SN), describing our platform that enables multiplexed transcriptional profiling of chemical and genetic perturbations in large pools of co-treated cancer cell lines, with single-cell resolution.

[Sofia Panagiotopoulou @sofia_k_p]

Really cool: Simultaneous assessment of TF-binding and expression in single-cells. I really like the potential to use self-reporting transposons to record TF binding history through a lineage!

[arnavm.bsky.social @arnavm1]

I'm so excited to share that our paper on single cell calling cards is finally in print @CellCellPress! Link to the post-peer reviewed publication: https://t.co/Nb65OU95KI. A huge congratulations to all the co-authors!

What's changed since the preprint? 👇1/🧵

[Algorithmic Justice League @AJLUnited]

TODAY! Watch documentary Coded Bias screening at @ptownfilm. For tickets & more information, visit: https://t.co/c7K3awZb6g

#CodedBias #Ptownfilm #Provincetownfilmfest #PIFF2020