Stephen Shank

Applied mathematics Ph. D. developing software in bioinformatics

[Corin Wagen @CorinWagen]

This was fulfilling, but very hard; the key references were often obscure or hard to find, and it's tough to understand how everything fits together.

I wrote up a guide to make it easier for future aspiring quantum chemists to learn this material:

https://t.co/Z9I7dLfHHF

[Scripps Institution of Oceanography @Scripps_Ocean]

How do habitat transitions shape evolution? A study on sea catfishes supported by Scripps scientists reveals genomic insights into marine-to-freshwater shifts, adaptive radiation & body shape evolution over 50 million years. Read the paper in
@NatureComms: https://t.co/T6Ot4bezPi

[Fish Evolution Lab @FishEvoLabSIO]

1/📢 Exciting News! Using newly sequenced sea catfish genomes, we analyze signatures of selection across three major ecological axes within this clade. Our findings identify a heightened incidence of positive selection in marine-derived freshwater lineages. 🌊➡️🐟 #genomics

[AnaConesa @anaconesa]

Reading the reviews of a rejected proposal makes my blood boil. R3 states that the project doesn't develop a new methodology but "only" novel bioinformatics methods. How long will this disregard for computational research continue? Try to do your sequencing data analysis by hand!

[TU Informatics Studio @tubioinfostudio]

Greetings to all undergraduates, graduate students, staff, postdocs, faculty, and anyone at TU with an interest in biology and data!

Want to participate in the future of bioinformatics? Join us tomorrow if you’re curious about… (1/7)

[Michael Schatz @mike_schatz]

Today (April 2nd) marks four years since the untimely passing of James Taylor (@jxtx), Professor of Biology and Computer Science at @JohnsHopkins and one of the founders of Galaxy. To honor James, we have established the @jxtxFoundation for open-science (https://t.co/NexT2LnIDE).

[bioRxiv Bioinfo @biorxiv_bioinfo]

AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS https://t.co/vNbQtU0QLm #biorxiv_bioinfo

[Steven Weaver @stvnwvr]

Excited to share our latest paper on optimizing genetic distance thresholds for inferring HIV-1 transmission networks. Our heuristic scoring approach adapts to diverse epidemics with an aim of improving identification of clusters & aiding public health interventions.

[Temple University Graduate School @Temple_Grad]

This week we are proud to showcase Hannah Kim, a PhD candidate in Bioinformatics in @CST_TempleU 🧬

[Hannah Kim @hannahincompbio]

I have shared some of my experience at Temple with Temple University Graduate School! And mind you, it was a long list to choose from. I am grateful for all the opportunities provided.

Stay tuned 📻~

@TempleUniv @CST_TempleU @temple_bio

[Nicholas McGranahan @NickyMcGranahan]

CONIPHER, our method for automated reconstruction of tumour subclonal structure and phylogeny that we used in our recently published TRACERx studies, is now out in Nature Protocols! (https://t.co/MObIlTZf6D). Welcome to the CONIPHER TREEtorial, just in time for Christmas! 🌲 1/n

[@CEI-FCCC @CeiFccc]

Please Re-post
Free Hybrid @CeiFccc #Epigenetics Symposium w/ world-leaders in #academia & #Industry
GOAL- anyone, anywhere at any educational level see top-notch science
Free registration scan QR code
@FoxChaseCancer @GAlmouzni @job_dekker @KharasLab @METorresPadilla @HHMINEWS

[TU Informatics Studio @tubioinfostudio]

📷 Speaker Event Alert! 📷 Join us tomorrow, this Thursday at 4pm in BIOLIFE 237 for an incredible talk by @hannahincompbio , Bioinfo PhD student, as she explains how to use Hyphy for comparative sequence analysis.

If you like evolution, genetics, & exploring tools.
FREE🍕

[Perth Protein Group @PerthProteins]

Once again @bradyajohnston brings a gun to a knife fight. Holograms on his poster 😯 ... that's cheating 😅 #PPG2023

[@CEI-FCCC @CeiFccc]

Please Repost-
Excited to be recruiting @CeiFccc @FoxChaseCancer #epigenetic faculty to continue building our energetic, interactive, supportive #collegial environment

Our goal- Basic Discovery & help translate to positively impact patients
Apply here-
https://t.co/WtZ3qghckf

[Whetstine Lab @WhetstineLab]

Please Repost-
Excited to be recruiting @CeiFccc @FoxChaseCancer #epigenetic faculty to continue building our energetic, interactive, supportive #collegial environment

Our goal- Basic Discovery & help translate to positively impact patients
Apply here-
https://t.co/ipM1atjOtP

[TU Informatics Studio @tubioinfostudio]

Join us next Thursday, 4P ET @ SERC Building Conference Room 604 to see @FoxChaseCancer 's Dr. Hayan Lee ( @comp_epi_leelab ) present a seminar on her work/passion-- the Computational Epigenetics of Cancer & Aging research! @quaterniomics is an RA in Dr. Lee's lab-DM Joe 10-5-23.

[TU Informatics Studio @tubioinfostudio]

Dr. Gillian Queisser will be the second seminar speaker this Fall, this Thursday 4P (28-9-23) SERC604. If you need access from SERC1 Lobby by elevators between Engineering hall & Women's restroom, email via flier email or DM @quaterniomics.🧬
Neuro-VISOR: https://t.co/fJr3ih4O1H

[TU Informatics Studio @tubioinfostudio]

These two speakers will be followed by Dr. Hayan Lee on October 5, 2023. We apologize for any previous confusion Joe (
@quaterniomics
) may have caused anybody.

[TU Informatics Studio @tubioinfostudio]

Bioinformatics Studio FW 2023-24 season begins Thursday, August 31 4PM ET @ SERC604. DM @quaterniomics for access permission (They will take you and your friends up). We will meet every Thursday this semester: bring your curiosity as well as questions.

https://t.co/bJ3gurAkXM