Tyler Funnell

Computational Biologist

[Ed Reznik @EdReznik]

For those of you hunting for your next position, please consider applying for a postdoctoral position in our lab. Our science is wild and exciting, and I promise to train and feed (yes, w/free food) you well. It doesn't hurt that we are on a publication hot streak.

[Teng Fei @StatFei]

Interested in developing biostatistical / machine learning tools with applications in translational cancer microbiome research? I am hiring a postdoctoral scholar @MSKBiostats! Please feel free to DM if you have questions.

https://t.co/I87cDyJvWp

[Teng Fei @StatFei]

Excited to share our R package for microbiome data analysis, published @CellRepMethods, which makes log-ratio lasso regression more accessible for R users, supporting continuous, binary and survival (competing risks) outcomes.
https://t.co/YeXHzPdoBZ
https://t.co/ipBvWQl8FK

[Adam Weiner @adamcweiner]

Interested in DNA replication and genomic instability? Our new method PERT identifies S-phase cells and estimates replication timing from single cell whole genome sequencing (scWGS) data with heterogeneous copy number https://t.co/o2d8ZXlnbR 1/10

[Jonathan (Tsoni) Peled @tsonipeled]

My new lab at @MSKCancerCenter is recruiting a postdoc and also a computational biologist to work on #microbiome and cancer #immunotherapy.
https://t.co/UOnErs4jZQ. Postdoc position linked below. compbio position soon. Please reach out.
https://t.co/mqaj2GZtAS

[Tyler Funnell @tylerfunnell]

My wife, Vicky, made an award-winning & touching short film "Elephant". It's about a jovial old man trying to process his Alzheimer's diagnosis while agonizing over how to protect his love from heartbreak.

https://t.co/nDpJPNpfCv

A love story in time for Valentine's Day 🙂

[Tyler Funnell @tylerfunnell]

Exciting opportunity for a Data Engineer to join the van den Brink lab at MSKCC and help us understand how gut bacteria affect cancer patients!
https://t.co/iSoiVm1rpz

[Tyler Funnell @tylerfunnell]

Hey everyone, for something a little different on Black Friday, I'd like to show you a no budget micro-short my wife (I helped a bit) made before the pandemic.
She shot it in <4 hours with a couple of talented SAG actors!
https://t.co/Y6y4BMG6Ui
#indiefilm #shortfilm #Filmmaking

[Samuel Aparicio @sajraparicio]

Interested in structural variant mutational processes at single genome resolution? latest preprint, product years of hard work, reveals clock-like serrate structural variants. kudos to @tylerfunnell @oflanach , everyone in @sajraparicio & @SohrabShah labs. https://t.co/2PjGNidtxQ

[Marc Williams @marcjwills_]

Excited to share some new work with @sajraparicio, @SohrabShah, and teams where we looked at genomic instability at allele-specific resolution in more than 30,000 single-cell whole genomes 1/11

[bioRxiv @biorxivpreprint]

Evolutionary tracking of cancer haplotypes at single-cell resolution https://t.co/iiYP823v49 #bioRxiv

[bioRxiv @biorxivpreprint]

The impact of mutational processes on structural genomic plasticity in cancer cells https://t.co/TG9iBqHu13 #bioRxiv

[Nature Methods @naturemethods]

CellAssign from @SohrabShah and @kieranrcampbell uses a probabilistic model to leverage prior knowledge of cell-type marker genes to annotate scRNA-seq data. https://t.co/IkkHxEPyYG
Read our News & Views on supervised clustering for #SingleCellAnalysis.
https://t.co/p6eYjQIg0e

[Ed Reznik @EdReznik]

Twitter friends: My lab is searching for an eccentric, excited computational postdoc/scientist to lead multimodal (metabolic, immunophenotypic, genetic) analysis in RCC and AML. Job ad coming soon, pls spread the word and come join the vibrant community @CompOncMSK @KidneyCancer

[Kieran Campbell @kieranrcampbell]

Our method CellAssign for automatically assigning cell types from scRNA-seq data is published today

Paper: https://t.co/BpJRSHcGSM

R package: https://t.co/8HrJm99ODx

(1/8)

[Tyler Funnell @tylerfunnell]

@nofilmschool Whoops just missed this, any way to still get it?

[eLife - the journal @eLife]

Reviewer 2 agreed that the ability to determine structures directly within the cellular environment would "transform structural cell biology" https://t.co/uLrnDXaCUZ #fromthedecisionletter #ResearchAdvance

[PLOS Comp Biol @PLOSCompBiol]

New from Funnell et al. Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models https://t.co/UooInmF8d2 Part of our cross journal #MachineLearning in Health and Biomedicine collection https://t.co/KF78oZYiFH

[Sohrab Shah @SohrabShah]

A new statistical framework for mutation signature discovery out today: https://t.co/kcZmPng3Y7 . Fantastic work by @tylerfunnell - integrates multiple mutation types into signature discovery with correlated topic models: relevant to cancers with DNA repair defects.

[Tyler Funnell @tylerfunnell]

@ChrisCScott @cancersociety Maybe we should have bottle labels https://t.co/RWqowKSwSl