upendra devisetty

Director of Data Science @GreenLightBio1 | Genomics | Machine Learning | Author of Deep Learning for Genomics (

[upendra devisetty @upendra_35]

@akshay_pachaar In addition to this, there are other nice data analytics and visualization tools that leverage Gen AI
1. Dataline (https://t.co/YOXua3v2DE)
2. Julius Ai (https://t.co/5MZsgc49Q9)

[Anshul Kundaje @anshulkundaje]

I'm making an open offer to any compbio grad students/postdocs who are aiming for faculty positions. If you have strong impactful research but no glam pubs & need someone to advocate for you, please get in touch. I promise u, I & a bunch of other faculty will strongly support u.

[Jacob Schreiber @jmschreiber91]

@anshulkundaje @thabangh @ZhipingWeng @UMassChan @IMPvienna @WUSTL If you're interested in my work, or the general genomics + ML field, and looking for a position starting in ~2025, please reach out! I'll be looking to hire grad students, post-docs, and staff scientists.

[Lana Garmire 🌶 @GarmireGroup]

Any self-identified #male researchers out there doing #DataScience in #women'sHealth? I am looking for speakers at the session that I will chair at DahShu Data Science Symposium, May 16-18th in Michigan State University. Please self-recommend or nominate, or RT. Thanks!

[upendra devisetty @upendra_35]

AI tools that can help you chat with your data through the most common programming languages.

1. Vanna https://t.co/SRdat0XaEj
2. PandasAI: https://t.co/548XEn9CuI
3. RTutor: https://t.co/mtIg57eUFk

These tools are open source and make data analysis conversational.

[upendra devisetty @upendra_35]

Vanna is a Python-based AI that writes SQL queries for you. It is free and can be used with its own API (free) to train and ask questions. Very easy to install, train your own LLM, and ask questions. Also, have UI. Very impressed with the simplicity https://t.co/SRdat0XaEj

[upendra devisetty @upendra_35]

@tangming2005 You have to be precise with your timelines when working in a company. A rule of thumb would be to look at how much time it took for a similar analysis and add a week. We have a KPI ("NGS analysis turnaround") that we have been tracking which is helping us to answer that question.

[upendra devisetty @upendra_35]

@strnr Thanks for sharing this list. All of them look super interesting. I bookmarked them and started reading the RNA-Seq paper already.
How did you manage to read them all in 2 weeks? It's a lot

[Geert van Geest @geertvangeest]

2023 has been a special year: we released https://t.co/7b5V9AcmiH. Since then it grew to more than 500 repos with #bioinformatics #training material.

Kudos to all the contributors! Especially to @P_Palagi and @choup.

Below are some top 3s of topics, organizations, and repos.

[upendra devisetty @upendra_35]

@IgorUlitsky I like the idea of creating a "papers" Slack channel. We also do once-a-month JC and we rotate within and whoever is presenting will send a relevant paper to the group 2 weeks before. We have "Key Takeaways" and "Discussion" slides in addition to figures and background slides.

[upendra devisetty @upendra_35]

@bindureddy Interested!!

[upendra devisetty @upendra_35]

@MatildeConcilio @MannaLiberato I agree with you as well. I got my first Postdoc that way. Of course, I had to interview before I got accepted but everything started with that one email expressing my interest. Never hurts to send an email expressing your interest in working in that lab.

[Nick Polizzi @nickpolizzi_]

I’m looking for a postdoc who would like to work primarily in the wet lab while also learning a bit of computational protein design. Lots of exciting projects! Please reach out if interested!

[upendra devisetty @upendra_35]

Our Data Team @GreenLightBio1 has an opening for Full Stack Developer. More details here..
https://t.co/FKmSRCeVRP

[upendra devisetty @upendra_35]

Want to improve prompts for #ChatGPT try this new tool https://t.co/c82CLe1kVJ

[Zheng Wei @wzweizheng]

Our latest work about eXplainable AI in genomics is published in PNAS: NeuronMotif is an algorithm to extract cis-regulatory grammar (motif combination, order, gap sizes) learned by convolutional neurons in a convolutional neural network (CNN).

https://t.co/IlW81RvWwt

[upendra devisetty @upendra_35]

@dr_alphalyrae @benchling Congrats and good luck in your new role. We have just onboarded Benching in our company and we are excited to use that.

[Chris Staudinger @ChrisStaud]

This new AI programming tool makes coding way easier and faster.

Try it to give yourself coding superpowers (it's completely free):

[upendra devisetty @upendra_35]

https://t.co/W8H4ktzJgM

[Ming "Tommy" Tang @tangming2005]

All biology is computational biology.
data are omnipresent, learn computational skills and you will be unstoppable.
Take 5 mins to bookmark the following threads to guide your learning 👇🧵

https://t.co/YCaSUhUd2U