Patrick W. van Zalm

Ph.D. student at the Steen lab at Boston Children's Hospital, working on Alzheimer's Disease, biomarkers, proteomics and mass spectrometry.

[Journal of Proteome Research @JProteomeRes]

The @steen_lab presents a Fragpipe-based parallelization strategy for analysis of LC-MS proteomics data. Their strategy reduced run time by 90% & enables them to map the proteomes of 1000s of samples! https://t.co/LP970Uapvr

[Alexey Nesvizhskii @nesvilab]

The Hanno Steen lab at Boston Children's' Hospital optimized #FragPipe for a high-performance computing environment, and applied it to analyze 3348 timsTOF plasma samples (6.4 Tb) from a longitudinal COVID-19 patients study. https://t.co/fP7ZkfbfyP

[Patrick W. van Zalm @w_zalm]

@nesvilab Where can I find the headless option? Is there, for example, a Dockerhub version of it? Or Singularity?

[Patrick W. van Zalm @w_zalm]

@SBGrid @bch_rc @labs_mann @Omic_Era Many thanks for this! Does it follow the latest release? Or would we have to request that?