Boston Children's Hospital Research Computing

Supporting #biomedical and #clinical research, #datascience #bioinformatics #genomics at @BostonChildrens

[SBGrid: Structural Biology Software @SBGrid]

Last call - SBGrid mini-symposium - #CryoEM of membrane proteins, with opening keynote by Nieng Yan, @Princeton, next Tuesday, noon, EST.

The molecular choreography of Cav/Nav channels – A mission impossible by today’s #AI (#AlphaFold2 ?)

Register at:
https://t.co/BIChtAjrr0

[SBGrid: Structural Biology Software @SBGrid]

Using #AlphaFold protein structures in @UCSFChimeraX for #cryoEM modeling, by Tom Goddard - as part of the SBGrid Mini-series on #cryoEM of membrane proteins.

Register today at https://t.co/BIChtAB2PA

[Boston Children's Hospital Research Computing @bch_rc]

We just rolled out @ProjectREDCap Time Tracking tool for all employees at @BostonChildrens . Thank all members of ISD for getting this in place so quickly.

[SBGrid: Structural Biology Software @SBGrid]

AlphaPept, by @labs_mann - a novel ultra-fast data analysis toolbox for MS/MS data analysis is now included in our BioGrids collection.
https://t.co/h9huX6Bb6I
Reference: https://t.co/JTrU4VYhJ0
#proteomics, @Omic_Era

[AMIA @AMIAinformatics]

Submissions are now open for AMIA's newest production: AI Evaluation Showcase. Three stages of submissions to be woven through each 2022 AMIA conference. Stage I - Technical Performance Studies due December 1. Learn more. #AIShowcase https://t.co/0Sb3VbMlfY

[Boston Children's Hospital Research Computing @bch_rc]

In collaboration with @Zones, @bch_rc now supports purchasing of standard desktop and laptop computers for our research community.

[Boston Children's Hospital Research Computing @bch_rc]

Top website with Microsoft templates: https://t.co/KqFhz1tkZ5

MS Office is available to all Pediatric Scholars at BCH.

[‘Tunde Omotoye @TundeTASH]

Here are Top 10 Sites for free Excel Templates:

1. Microsoft Office Templates
2. Vertex42
3. SpreadsheetZONE
4. PortfolioSlicer
5. Smartsheet
6. Chandoo
7. Spreadsheet123
8. Trumpexcel
9. ExcelTemplate .Net
10. WPS Template

[Geneious @Geneious]

Watch this video to learn how to keep your files organized in Geneious Prime. Discover how you can easily import new files, organize your folder system and search for documents.
https://t.co/gxbmTVkYR3

[MATLAB @MATLAB]

Go from a MATLAB script to app in 0 lines of code! https://t.co/1d19YQZ617 #LiveEditor #coding #code #coder

[Boston Children's Hospital Research Computing @bch_rc]

Thank you @arash_nemati for setting this up!

[The AI Conference @AIconference]

RT arash_nemati Our AI deep-learning model for cell image binary segmentation @bch_rc @mghpcc with up to 99.6% Accuracy.
Software: @SBGrid #biogrids @TensorFlow @ProjectJupyter
Dataset: BBBC005v1 Broad Bioimage Benchmark Collection, Ljosa et al., Natur… https://t.co/9LrWpQWxwe

[The AI Conference @AIconference]

RT arash_nemati Our AI deep-learning model for cell image binary segmentation @bch_rc @mghpcc with up to 99.6% Accuracy.
Software: @SBGrid #biogrids @TensorFlow @ProjectJupyter
Dataset: BBBC005v1 Broad Bioimage Benchmark Collection, Ljosa et al., Natur… https://t.co/9LrWpQWxwe

[Boston Children's Hospital Research Computing @bch_rc]

new Alamut features available to BCH community

[SOPHiA GENETICS @SOPHiAGENETICS]

Alamut Visual Plus accelerates assessment of complex variants on a genome level. Highly appreciated by its expert users, the software integrates different data sources, guidelines and predictor tools into a user-friendly interface. Learn more: https://t.co/75NfjbLQ3I

#biotech

[Piotr Sliz @PiotrSliz]

Don't miss the upcoming lecture by Prof. Tamir Gonen, @gonenlab, as part of the ongoing @SBGrid Australasian #CryoEM Mini-series. Next Wednesday at noon, New Zealand Daylight Time, on zoom.

#MicroED: conception, practice and future opportunities

https://t.co/28rrv520du

[CHIP Informatics @Bos_CHIP]

Join our upcoming Landmark Ideas seminar on 11/15 to hear from @Ayjchan- a scientist at America’s biggest gene center- who was one of the first scientific voices to question whether #COVID19 emerged naturally or from a lab.

Register here: https://t.co/zdwQfrQVvM

[SBGrid: Structural Biology Software @SBGrid]

Great talk by Tom Goddard now, on use of #AlphaFold in @UCSFChimeraX. We will post the recording on the @SBGrid @YouTube channel within a few weeks.

[Boston Children's Hospital Research Computing @bch_rc]

Thank you @TimSpringerLab for suggesting this software addition.

[Piotr Sliz @PiotrSliz]

Is your structure unique? Dali AF-DB comparison search compares one query structure against a species subset of the #AlphaFold Database. We are also planning to add the standalone Dali package & #AlphaFold2 DB to @SBGrid. Happy computing!

https://t.co/v6sK8U3nJ7

[ChrisAWalsh @ChrisAWalsh1]

So proud of the amazing work from @emauryg and @Javier_Ganz !

[Mark Gerstein @MarkGerstein]

.@timyu at the N-of-1 Precision Medicine Session at #ASHG21: Talks about unmet needs in ultra-rare diseases. Describes individualized medicine, trying hard to reverse the effects of rare mutation in a newborn #ASHG2021

[Alex Rosenberg @dna_rosenberg]

Want an easy and accessible solution to do single cell sequencing on 1M+ cells in a single experiment? We just released the Whole Transcriptome Mega kit to do just that!