Wujie Wang

automate discovery

[Liam Bai @liambai21]

As a vibe coder in biotech, I've been thinking a lot about LLM safety filters and jailbreaks – prompting techniques that bypass them.

I found these topics to be an instructive lens into LLM internals, so wanted to share my notes in this short thread & blog post 🧵

[Wujie Wang @wwang002]

Our team is looking for a scientist to work on {agent systems, biology}

Apply here:
https://t.co/7xu1PK3KSu

[Wujie Wang @wwang002]

I'm claiming my AI agent "opus-cli-agent" on @moltbook 🦞

Verification: burrow-6CKX

[Sudha Kumari @Sudha__Kumari]

Thrilled to share our recent work in @emboreports @EMBOPress that uncovered actin waves in lymphocytes, which rescue antigen receptor loss during immune response🎉🎉. Super thankful to @India_Alliance @ANRFIndia @Infosys @MOE-STARS🙏🙏🙏

https://t.co/utPcYHhbdg
Thread below:

[Wujie Wang @wwang002]

vibe code a demo on fitting vMF mixture, simple and powerful idea!

[Andrea Tagliasacchi @taiyasaki]

📢📢📢 𝐒𝐩𝐡𝐞𝐫𝐢𝐜𝐚𝐥 𝐕𝐨𝐫𝐨𝐧𝐨𝐢: directional appearance as a differentiable partition of the sphere

– Project: https://t.co/mUPYvL887s
– Paper: https://t.co/v1SZrVfVoA
– Colab: https://t.co/WLJDMpv7Yu

Project led by 𝐅𝐫𝐚𝐧𝐜𝐞𝐬𝐜𝐨 𝐝𝐢 𝐒𝐚𝐫𝐢𝐨 (graduating!)

[Andrea Tagliasacchi @taiyasaki]

📢📢📢 𝐒𝐩𝐡𝐞𝐫𝐢𝐜𝐚𝐥 𝐕𝐨𝐫𝐨𝐧𝐨𝐢: directional appearance as a differentiable partition of the sphere

– Project: https://t.co/mUPYvL887s
– Paper: https://t.co/v1SZrVfVoA
– Colab: https://t.co/WLJDMpv7Yu

Project led by 𝐅𝐫𝐚𝐧𝐜𝐞𝐬𝐜𝐨 𝐝𝐢 𝐒𝐚𝐫𝐢𝐨 (graduating!)

[Zhuoran Qiao / 乔卓然 @ZhuoranQ]

Today we are releasing NeuralPLexer3 (NP3) technical report, along with opening-sourcing NPBench - our turnkey library for fair benchmarking of co-folding structure prediction models on diverse interactions - a task that has challenged this field.
👩‍💻: https://t.co/y5xZ9VXtEc

[Wujie Wang @wwang002]

@generate_biomed 's summer internship program

https://t.co/CGpZQtKaT4

[Joe Greener @jgreener64]

Introducing reversible molecular simulation: differentiable simulation but with constant memory.

Useful for training classical and machine learning force fields to match experimental data. Feedback very welcome!

https://t.co/YOm8Bi0VI5

(1/8)

[Mohit Mishra @chessMan786]

CPU vs FPGA
- what an easy and well explanation in 25 seconds

[Ben Dicken @BenjDicken]

You asked for it, so here it is.

Visualizing CPU cache speeds relative to RAM.

Cache optimization is important too!

[Wujie Wang @wwang002]

@rishabh16_ Consider applying to @generate_biomed next year!

[Alex Chu @alexechu_]

Protpardelle 🍝 came out in @PNASNews last week! highlights of new results:
- backbone-only model compares with RFdiffusion
- flow-based likelihoods predict designability
- better filtering on AFDB improves quality and diversity
- measure scaffolding and repacking performance

[Benjamin Kurt Miller @bkmi13]

Announcing our new model for materials!

FlowMM...
- Generates stable & novel materials efficiently
- Predicts crystal structure accurately
- Generalizes Riemannian Flow Matching to point clouds w/ periodic boundaries

https://t.co/ZvQgAGyOsM
@RickyTQChen @anuroopsriram @bwood_m

[Zhigang Suo @zhigangsuo]

When I came to US for graduate study, in 1986, the Harvard International Office made Ed and Jane my host parents. “My father likes math,” their son told me. “Me too,” I said. Years later, I learned that Ed invented chaos theory. https://t.co/n0WAnCqcId

[Wujie Wang @wwang002]

@Mickdub29 @BTC_Mass @NEEDcreations @BTC_MS_THRIVING @rounakskm @ConorChepenik 🤩🤩🤩 how is this song related to bitcoin?

[Erin Yang @erincyang]

Making a commitment here that I’ll talk about symmetric protein design from a perspective you couldn’t have read about somewhere 😉

[Gevorg Grigoryan @ggrigoryanv]

Our third year hosting this program. It has been incredibly rewarding for all of us in the team to interact with amazingly talented PhD students. Looking forward to another summer of fun science!

[Ivan Fioravanti @ivanfioravanti]

Hey @tim_cook if you see a spike in M2 Ultra and M3 Max sales in Q4, please look at your Apple Machine Learning Research team.
They did the magic: MLX 🪄

https://t.co/l8tACp9TP6

[Jan Jensen (janhjensen.bsky.social) @janhjensen]

A foundation model for atomistic materials chemistry https://t.co/PQtoiXbzFv #compchem