Won Cheol Yim

Assistant Professor, UNR

[Won Cheol Yim @wyim09]

final piece of the Triangle of U: Evolution of the tetraploid Brassica carinata genome https://t.co/If2uQ5ZJMb @annaliese_mason @ProteinUniverse @dalvarezponce @dylan_kosma @miamiapizzeria
@thebirdmaniac
#brassica #genome #GlobalWarming #agriculture #biofuel

[Won Cheol Yim @wyim09]

Department of Energy awards $9 million for national research project on cactus pear’s bioenergy potential
https://t.co/gbnMGzTAxF via @unevadareno #CactusVibes #cactus #DOE #microbiome #opuntia

[Won Cheol Yim @wyim09]

I found this job on Plantae Jobs (https://t.co/IxvfkBPqZk) and thought you might be interested. https://t.co/SD3Olu0W4v

[Damon Lisch @DamonLisch]

Nice example of R mottling, epigenetic silencing of the R gene when it is passed through the pollen. Why does it involve flipping from one state to another in sectors? We don’t know.

[James Schnable @szintri]

Transcriptome wide association studies in plants can address some of the biggest limitations of GWAS, particularly identifying specific candidate genes. New review lead by @vla_torres with input from @DelinBio (1/2)

[Juhyun Kim @juhyunk_]

Single-cell genomics breaks new ground in cell cycle detection https://t.co/OsTBscEJTI #journals #feedly

[iMeta @iMetaScience]

JCVI: A versatile toolkit for comparative #genomics analysis https://t.co/vS1dOpgkNy
#bioinformatics #visualization #Python

[iMeta @iMetaScience]

iMeta has obtained the first Impact Factor 23.7! 👏👏👏We publish research in #metagenomics and #bioinformatics, welcome to submit your work to iMeta! More details: https://t.co/wzLbm1FYio
@wileymicrobio @WileyBiomedical @WileyHealth @YongXinLiu7 @jingyuan_fu @CanhuiLan

[antisense. @razoralign]

LRGE: Genome size estimation from long read overlaps https://t.co/iG3mkMxKQO

[antisense. @razoralign]

GAGER: gene regulatory network assisted gene expression restoration https://t.co/kbEi7Qlzll

[Won Cheol Yim @wyim09]

iMeta | JCVI: A versatile toolkit for comparative genomics analysis https://t.co/5wo9MyDWZ8 via @YouTube

[Won Cheol Yim @wyim09]

JCVI: A versatile toolkit for comparative genomics analysis - Tang - 2024 - iMeta - Wiley Online Library https://t.co/TvtLqnZWK6

[Won Cheol Yim @wyim09]

Just published: Our new tool, NeuroPeptide-HMMer, uses hidden Markov models to discover neuropeptides, even in underexplored invertebrates. It will help us uncover novel peptides and understand their evolutionary roles. #Neuroscience https://t.co/KhYagOHVEo👋@zandawala

[Heng Li @lh3lh3]

Pangene now published in Bioinformatics: https://t.co/lqGhzDJ938. In addition to showcasing applications (see the 17q21.31 inversion below), we also reviewed the theoretical formulation of bidirected graphs and discussed the definition and the finding of "bubbles" in such graphs.

[Won Cheol Yim @wyim09]

Just published: JCVI library: a versatile Python toolkit that unites genome assembly, annotation, and comparative genomics. A must-have for genome research! #Genomics #Bioinformatics #Python https://t.co/TvtLqnZWK6

[antisense. @razoralign]

KMAP: Kmer Manifold Approximation and Projection for visualizing DNA sequences https://t.co/VxjW60kFkL

[Shujun Ou @SigmaFacto]

Our undergraduate researcher, Tianyu, gave a beautiful talk at the OSC Symposium focusing on the reimplementation of TIR-Learner v3 with efficient in-memory computation and clever multithreading schemes. Tianyu is looking for grad schools in computational biology!

[Douglas Domingues @dougsd3]

In this study in @NatureGenet we deliver a new assembly to the Arabica coffee genome, tracing its origins to a fusion 610k years ago and identifying genes for disease resistance and chemical compositions. Thanks to all collaborators!

https://t.co/ZxT1cqYEVG

[antisense. @razoralign]

GCI: Genome Continuity Inspector for complete genome assembly https://t.co/ej7vmfAgnq

[Won Cheol Yim @wyim09]

@CrabSolana 3SB4jSZafgeoXcnmHbfJEUwysLVN8eDmyw7JULnmasMu

[Heng Li @lh3lh3]

Minipileup, a straightforward pileup-based multi-sample variant caller. Useful for data inspection or when mainstream callers are not applicable. Initially developed in 2012 as part of htsbox. Now released in a separate repo: https://t.co/QXEkQXKSHz