ZENCODE-ITN

This project receives funding from the @EU_H2020 Research & Innovation Programme. Any related tweets reflect only the views of the project owner. Zebrafish FTW!

[Damir Baranašić @CroBeaver]

I am happy and proud that our DANIO-CODE @daniocode paper is finally out in Nature Genetics @NatureGenet! I wish to say thank you to everyone who helped and supported our work up until now, with the hope we can continue to deliver in the future as well!
https://t.co/HRhwkmMnHd

[DANIO-CODE @daniocode]

DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) https://t.co/FQ6Zn6StOE

[Sanjana @Sanjana17791037]

Really excited to share my first author paper from my thesis work published in @genomeresearch https://t.co/TJcGMglO6z In this study we show the presence of two different sets of antisense ncrna’s during zebrafish development.

[Aditi Kanhere @Kanhere_lab]

Our work on antisense ncRNAs is now accepted and online in @genomeresearch. Congratulations to @Sanjana17791037 on her first author publication and hard work. Also @carninci and Hazuki for great collaboration, reviewers for constructive comments. @ZencodeITN

[Fabio M. D'Orazio @FabioDorazio]

We started the this project with the ambitious goal of studying how the germ line links generations at the beginning of life. Now I like to think that goal is achieved and we better understand how the germ line forms. Great thanks to all co-authors

[ferencmueller @ferencmueller]

Please check out our paper in Developmental Cell (https://t.co/lCsxCOpcKn) on the 2 phases of chromatin accessibility and genome activation in zebrafish PGCs. By @FabioDorazio with @PiotrBalwierz @Circe777 and contributions @splendidsunjane B Cairns @vaquerizas @BorisLenhard labs

[Daub Lab @daublab]

Working in big and small collaborations, we see a strong need to combine the description of sequencing experimental designs and data to support the (re)usability of data and their sharing.

[ferencmueller @ferencmueller]

Our new work on distinct transcription initiation regulation by cell cycle dynamics @zebrafish in bioRxiv: https://t.co/CQnHu8xGK9 by @j_wragg_bham with L Roos, @ncvetesic @BorisLenhard lab #generegulation

[ferencmueller @ferencmueller]

Our ms on regulation of transcription in primordial germ cells is out in BioRxiv https://t.co/pV0b0GrM17 led by @FabioDorazio @PiotrBalwierz with @vaquerizasjm @BorisLenhard B. Cairns lab #ZencodeITN #pgc #generegulation. See related study https://t.co/Ti6X49UlQf by @KettingLab

[Heisenberg Lab @HeisenbergCPLab]

New paper alert!!! Read our latest by @CSchwayer to see how and why tight junction proteins phase separate and flow in vivo! A thread will follow soon :)

[James Briscoe @briscoejames]

Exciting @Dev_journal special issue on chromatin & epigenetics

Highlights the new technologies & thinking changing the field

Many thanks to our editors @benoitbruneau, Haruhiko Koseki, Susan Strome and Maria-Elena Torres-Padilla for putting it together

https://t.co/z4N8GDt9hU

[Piero Carninci @carninci]

E' tempo per essere coinvolti personalmente in una grande scommessa,... https://t.co/XUtQnMqSKJ

[Aditi Kanhere @Kanhere_lab]

Many Congratulations to Sanjana for successfully defending her thesis! @Kanhere_lab @ferencmueller @ZencodeITN

[Luciano Martelotto 🛠🧬💻🇦🇺 @LGMartelotto]

Both platforms showing VERY CONSISTENT results! Comparative analysis of sequencing technologies for single-cell transcriptomics https://t.co/ARCdLK5hu1

[Anshul Kundaje @anshulkundaje]

I'm starting to lose track of all the highly nebulous 3D genome terms TADs, microTADs, subTADs, domains, loops, contacts, CRDs. I love reading about this stuff but it's literally impossible to know exactly how these terms map to each other in different papers. Please standardize.

[ZENCODE-ITN @ZencodeITN]

Great talk on the role of hand2 in mesothelial progenitors in zebrafish @karin_prummel @chrmosimann #EESCellTypes

[ZENCODE-ITN @ZencodeITN]

Congratulations to our ESR Andrea for a successful PhD defense 🎉#DrMariossi

[ZENCODE-ITN @ZencodeITN]

Congratulations to our ESR Ana Rosa for a successful PhD defense! #DrLopez

[ZENCODE-ITN @ZencodeITN]

Congratulations to our ESR Sanamjet on successfully defending his thesis! 🎉

[ZENCODE-ITN @ZencodeITN]

Today ESRs Swarnima Joshi and Sanamjeet Virdi from Strähle Lab at KIT published their first paper of which they are co-first authors.
Check it out fresh from the press:
https://t.co/ptHQg0CLEN