DANIO-CODE

This is the official Twitter account of DANIO-CODE, an international collaborative effort that aims to annotate the functional elements of the zebrafish genome.

[DANIO-CODE @daniocode]

The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet https://t.co/CjhNki9yj3. In addition to the BioRxiv submission https://t.co/koMC0IW6fH in this paper we added further resources and results. (1/n)

[DANIO-CODE @daniocode]

DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) https://t.co/FQ6Zn6StOE

[ferencmueller @ferencmueller]

Fantastic talk at @BCGB_UoB by @bogdanoviclab from @CABD_UPO_CSIC on DNA methylation during vertebrate development and evolution @daniocode #epigenetics #embryogenesis #daniocode

[Merlin Lange @Merlin_Lange]

One week ago we released https://t.co/FP1UgRWmm5 the @czbiohub #scRNAseq dataset of zebrafish development with a very intuitive explorer.
The data is open access here https://t.co/PX0DX7Mkcr

In this #Thread I'm going to give you a tutorial on how to use #zebrahub 👇
1/n

[Loïc A. Royer 💻🔬⚗️ @loicaroyer]

📡 Big day today!

Our first #singlecell RNAseq dataset is now live on #Zebrahub: 10 #zebrafish developmental stages, 40 individual embryos, ~120'000 cells. Dataset spans end-of-gastrulation to 10-day larvae.

Portal: https://t.co/ld98EVW127
Dataset: https://t.co/UY1whaaQFk
1/n

[Erin Jimenez @ErinJimenezPhD]

The deep learning model integrated information about enhancer activity (like ChIP-seq data, histone modification data, known motif sequences and actual vertebrate data from zebrafish @daniocode. We found patterns of transcription factor binding site enrichment 8/n

[Erin Jimenez @ErinJimenezPhD]

I’m proud to share my postdoctoral research in @SMBurgessLab identifying regeneration enhancers in zebrafish inner ears at single-cell resolution. 1/n

[Nathan Lawson @LawsonZFLab]

Congrats to @ferencemueller and the @daniocode team on their @NatureGenet paper! https://t.co/Z7J5WeplZr. Incredibly valuable resource. Underscores collaborative spirit in #zebrafish community. Maybe @NIH and @ERC_Research can step up for phase 2 support?

[ZFIN @ZFINmod]

Good to see this published and glad we could provide support.

[DANIO-CODE @daniocode]

Thanks for technical support by @ZFINmod, @GenomeBrowser, @emblebi, @ensembl, and @dnanexus. (14/n)

[DANIO-CODE @daniocode]

The comprehensive atlas of developmental regulatory elements in zebrafish is published today in @NatureGenet https://t.co/CjhNki9yj3. In addition to the BioRxiv submission https://t.co/koMC0IW6fH in this paper we added further resources and results. (1/n)

[DANIO-CODE @daniocode]

DANIO-CODE is proud to share our findings and a huge multi-genomics resource on the regulatory elements in the development of #zebrafish. We analyzed 1,802 previously (un)published sequencing data sets across 38 developing stages and 21 assay types. (1/n) https://t.co/FQ6Zn6StOE

[DANIO-CODE @daniocode]

Also, huge thanks to the #Horizon2020-programs (@ZencodeITN, @AQUA_FAANG, @PrecisionTox). DANIO-CODE has been an example of how Horizon support boosts bottom-up collaboration including the UK (@Stick2Science, @Scientists4EU). Thanks also to @wellcometrust, @BBSRC (13/n)