bioboxes

A standard for creating interchangable bioinformatics software containers

[Titus Brown @ctitusbrown]

Interestingly, @sjackman big comments mostly stem from us making research algo available well before research itself is done :) #openscience https://t.co/9c1TEpBewf

[Bill Hanage @BillHanage.bsky.social @BillHanage]

This is what scientific rigour looks like https://t.co/zpaN6dimgM

[M³ @join_M3]

For more info on how to use and create bioboxes: https://t.co/dzv8Rt6gIw , https://t.co/rvhOmWYuk7, & https://t.co/QzIUObVjg1

[bioboxes @bioboxes]

bioboxes is now backwards compatible with @docker versions up to 1.10, tested using @gitlab’s CI pipelines. https://t.co/5DkzSi6JyA

[bioboxes @bioboxes]

The @CAMI_challenge / @bioboxes hackathon in progress before the @join_M3 meeting next week.

[bioboxes @bioboxes]

@amit_49x this recipe might provide a better idea of how you would use a biobox - https://t.co/D7kPviUx4C

[bioboxes @bioboxes]

@armish to follow up further this recipe might give an idea of how to use bioboxes - https://t.co/D7kPviUx4C

[bioboxes @bioboxes]

@aneldavdw @henriettevdz1 You're welcome to open an issue on the GH issue tracker if you have any feedback.

[Dr. Lisa K. Johnson @monsterbashseq]

neat bioboxes demo at UCD by @bioinformatics with @ctitusbrown https://t.co/HiGDH2jkgm

[Michael Barton @bioinformatics]

@ctitusbrown thanks Titus, I think it would be extremely useful for making Khmer even more accessible. Would be"fastq -> fastq" signature?

[Titus Brown @ctitusbrown]

@bioinformatics thinking about making use of @bioboxes for orthogonal project; FYI: https://t.co/r1aY87tW6r

[Keith Bradnam @ACGT_blog]

New link blog post:
Assemble a genome and evaluate the result https://t.co/nvLfVevxXq

[bioboxes @bioboxes]

Example of using a biobox for the first time - http://t.co/r0YrfeSS1A

[bioboxes @bioboxes]

What is a biobox? - http://t.co/XCGAZlGXEv

[bioboxes @bioboxes]

On the topic of interoperability we have been discussing how a biobox could work in #CWL - https://t.co/JaASUUHVW4 #BOSC2015

[bioboxes @bioboxes]

@morgantaschuk @_pbelmann_ we can conference call at a later date also.

[bioboxes @bioboxes]

Peter Belmann (@_pbelmann_) will be presenting on bioboxes at 12pm today, and poster P14 at #bosc2015.

[bioboxes @bioboxes]

@morgantaschuk @_pbelmann_ is at #bosc2015. He will present a talk at 12 and then a poster P14.

[bioboxes @bioboxes]

The biweekly discussion of bioboxes by the core team - https://t.co/sbQk4OzcQX

[Paolo Di Tommaso @PaoloDiTommaso]

@nucleotid_es Indeed, that's the idea! I need to find some time to study the @bioboxes specification and work on it.