Boutiques

We containerize command-line data analysis tools to run them at scale.

[Boutiques @BoutiquesTools]

Are you developing or using open-source software in your research? Do you think that open science is important? If you answered yes to either question, consider self nominating to one of the open positions at @OhbmOpen, or tell a friend to do so!

[OHBM Open Science Special Interest Group (OS-SIG) @OhbmOpen]

We are excited to announce this year's Nominations for the @OHBM Open Science Special Interest Group (OS_SIG) for OHBM 2021! #OHBM2020

Please self-nominate yourself here!: https://t.co/gTHixx79Rj

[Boutiques @BoutiquesTools]

New release (0.5.24), with lots of contributions from Darrin Fong, @g_kiar and Arthur Masson. See release notes at https://t.co/xaRzjgDi4M

[Boutiques @BoutiquesTools]

We have a new release (0.5.2.post2) with a few bug fixes, including support for the recent @ZENODO_ORG API update that broke "bosh search" (thanks @StuartThiel !).

[Boutiques @BoutiquesTools]

We have a new release! With provenance export to @bluebrainnexus, tool import from docopt, and plenty of bug fixes.

[Boutiques @BoutiquesTools]

@raamana_ @TristanGlatard Thanks for the shout-out!

[Boutiques @BoutiquesTools]

Pipelines in @BrainLifeio can now be exported to Boutiques! Collaboration with @soichih on this topic started at the @INCForg interoperability workshop organized by @jbpoline in Montreal this Winter.

[brainlife.io @BrainLifeio]

Looking forward to our #demo today at #OHBM2019 we will show some #networks and #whitematter #datavisualization #CloudComputing with @soichih @spornslab @richardfbetzel @DaniSBassett @F_DeVicoFallani @dan_marinazzo @netneurosci @misicbata @talyarkoni @RCCraddock @IUScienceNews

[Ross Markello @rossdavism]

. @g_kiar discusses the FAIR principles for science. Our research and data should be:

✔️ Findable,
✔️ Accessible,
✔️ Interoperable, and
✔️ Reusable

For some great examples of tools than enable FAIR science in neuroimaging take a look at @datalad and @BoutiquesTools

#OHBM2019

[Boutiques @BoutiquesTools]

Our new tutorial, made with love during the @OHBM hackathon! https://t.co/aQHTK5NRV8 #OHBM2019 #hackathon

[Boutiques @BoutiquesTools]

With our new release you can generate Python functions from descriptors and use them in your scripts! https://t.co/ODWapNj4fP

[Camille Maumet @[email protected] @cmaumet]

Sorina Pop on using @BoutiquesTools in #vip for FAIR data analysis. Joint work with @TristanGlatard @g_kiar #geant19

[CONP / PCNO @CONP_PCNO]

Boutiques is now being integrated in the CONP portal. 100+ tools are expected to be published by the end of the year - awesome! Find these guys on GitHub https://t.co/CyW6Y9pxq2 to give them feedback #CONP2019

[Boutiques @BoutiquesTools]

Lots of new tools available recently! ANTs brain extraction and cortical thickness, FSL TOPUP and DTIFit, and a few others coming from Nipype interfaces.

[Boutiques @BoutiquesTools]

Come sprint with us at @pycon 2019! https://t.co/B77z0NLA97

[Camille Maumet @[email protected] @cmaumet]

And now @BoutiquesTools stickers! 😀😀😀 #moni

[Boutiques @BoutiquesTools]

Awesome, congratulations!

[Greg Kiar @g_kiar]

Happy to announce that our Clowdr paper (my first PhD-related first author pub) was just published!

In short, Clowdr is built on @BoutiquesTools and makes it easy to run, manage, record, and interact large computational experiments from the command line.
https://t.co/e5idDbrQjt

[Boutiques @BoutiquesTools]

New tool available (thanks @camarasu!): GATE simulator https://t.co/w187ss49tC

[Boutiques @BoutiquesTools]

New tool available (thanks @stbrown47s!): mriqc from @russpoldrack's lab. Start with "bosh pprint zenodo.2565170" (after "pip install boutiques") and take it from there! Soon in CBRAIN too.

[Boutiques @BoutiquesTools]

Looking for a diffusion pre-processing pipeline? @gkiar pushed one here! It supports data in BIDS format and it uses FSL. Just run 'bosh example zenodo.2554443' and take it from there.

[Boutiques @BoutiquesTools]

With the new Boutiques release you can generate example invocations for your tools using "bosh example <descriptor>". No need to type JSON objects from scratch any more! With awesome contributions from @g_kiar and @ErinBenderoff