Chaste Development

Chaste is a simulation package for computational biology & physiology. With individual-cell based modelling and continuum PDE codes.

[Chaste Development @Chaste_Project]

Last chance to register for the 8-10th January cell based Chaste modelling workshop @UoNCMMB - applications close Friday: https://t.co/EqY4S6jMmo

[Chaste Development @Chaste_Project]

🚨 Chaste workshop registration open now!
We'll be holding a Chaste workshop, focussed on our new individual-cell based models and python bindings, at @UniofNottingham Jan 8-10th 2025. Some travel funding available. Apply today!
https://t.co/EqY4S6kkbW

[Alex Fletcher @AlexGFletcher]

Reminder that @struttlab and I have a PhD studentship available, blending modelling and experiments to understand tissue patterning in a fluctuating environment https://t.co/M9zn1ERnGd

[osslab @osslab]

Interested in #spatial dynamics of cells and their #chemical environment? Check out this new tool developed by our great PhD student @JohnsonConnah ! https://t.co/vpujTKNw6o

[Alex Fletcher @AlexGFletcher]

After a nice talk on cytoneme-mediated patterning by @kyz1024 (what a nice application of @Chaste_Project!) we conclude the morning with a tour de force by @BlindMath: some modern challenges in pattern formation (featuring Turing cats 🐈)

[Connah Johnson @JohnsonConnah]

@Chaste_Project we are organising a virtual meeting (1st July) to develop a support network for all Students and Post-Docs using (cell-based) Chaste. If you want to join and get involved sign up! DM for queries. https://t.co/H3WU2ej0tG

[Alex Fletcher @AlexGFletcher]

"Seven challenges in the multiscale modeling of multicellular tissues", my review/opinion piece with @DIYOzzy, is now published online: https://t.co/tAg4PgrHla (Special thanks to anonymous reviewer 2 for suggesting 7 additional references, all featuring the same author)

[Ben Evans @b_d_evans]

🎉 Our new combined experimental and modelling paper of cytoneme-mediated tissue patterning in zebrafish brains is out! 🥳 Simulations powered by @Chaste_Project 🦾

[Alex Fletcher @AlexGFletcher]

@struttlab and I may have money for a postdoc modeller for 6-9 months, starting soon. Some planar polarity, some growth, some @Chaste_Project. Please contact me for details, or forward to anyone who might be interested. Thanks!

[Saskia Haupt @HauptSaskia]

Thank you for including our recent preprint ➡️https://t.co/y4ELAh1MXv in this week's #mathonco newsletter @mathoncbro 😊
Here's a video from our preprint on colonic #crypt evolution produced with @Chaste_Project.
🟡wild-type 🔵MMR-def. ⚪️APC+/- ⚫️APC-/- cells

[Alex Fletcher @AlexGFletcher]

If you're interested in multiscale modelling of multicellular tissues, I've written a short piece with @DIYOzzy on some of the ongoing challenges associated with doing this: https://t.co/HjBzUq7AXL

[Dagmar Iber @DagmarIber]

5. We use a cell-based vertex model using @Chaste_Project to confirm that a tangential apical force, as provided by shear stress, can result both in the reported bias in cell shape and in the observed elongating outgrowth.

[Paul Macklin @MathCancer]

Happy to share our new invited review on cell-based modeling in cancer, in @ASCO's JCO Clinical Cancer Informatics. We include curated collections at @Science_Open, making it a living review. Nicely done, @jmetzcar, @YafeiWang89, and @rheiland!

https://t.co/GxRXGx9le7

[JOSS @JOSS_TheOJ]

Just published in #JOSS_theOJ: 'Chaste: Cancer, Heart and Soft Tissue Environment' https://t.co/cNFXZhp7J3

[Linus Schumacher 🐘 🦋 @LinusSchumacher]

And here comes the (obligatory) plug for @Chaste_Project, and test-driven development - check out the tutorials and wiki https://t.co/wcyIlYR7Wi

[Chaste Development @Chaste_Project]

A snapshot from this @Chaste_Project simulation by Pras Pathmanathan:
https://t.co/UmdSluenDa

[Chaste Development @Chaste_Project]

We're also happy to announce much-improved docker support, making it even easier to get Chaste working, whatever your favourite OS is. Thanks @b_d_evans!

https://t.co/9egJqGbGEF

[Chaste Development @Chaste_Project]

Version 2019.1 has been released! Includes C++14 support, new features and bug fixes. Supports Ubuntu up to 19.04. Release notes here: https://t.co/nv3QqUAbuh Download here: https://t.co/xcy0momimK

[Chaste Development @Chaste_Project]

Version 2018.1 has been released. Includes improved C++11support and some bug fixes. Supports Ubuntu up to 18.10. Release notes here: https://t.co/Pd3wZJaTNK Download here: https://t.co/wYTgINP5Q3

[Chaste Development @Chaste_Project]

Version 2017.1 has been released. C++11, big infrastructure changes, plus many improvements and bug fixes. Supports Ubuntu up to 17.10. Release notes here: https://t.co/TkYWU3McPV Download here: https://t.co/Xg6OgLyQqF Happy holidays!