Ciro Salinno

🇮🇹 Postdoctoral researcher at the MIH - @TUM (Buchholz lab).

[Ciro Salinno @CiroSalinno]

@LickertHeiko @JohannaSiehler @BilekovaSara Congratulations @JohannaSiehler @BilekovaSara and @LickertHeiko. Happy to see this story out 🎉

[Francesco Padovani @frank_pado]

SpotMAX, our software tool for analysing multi-dimensional microscopy data, is finally out! 🎉 And conveniently, I just presented it at the #I2K conference 😀
A multi-year-long effort of many great collaborators and users. But what can SpotMAX do? A small thread

[Ciro Salinno @CiroSalinno]

@quorumetrix @frank_pado Hi @quorumetrix , Just wondering if you could give me feedback on this. I would love to try CellPlato. Thanks

[Ciro Salinno @CiroSalinno]

@quorumetrix Thanks for replying. I'm using ACDC software from @frank_pado. Then I use Cellpose to segment and Trackpy to track cells.

[Ciro Salinno @CiroSalinno]

@Carina_K_YANG @HannahSpitzer1 @KHrovatin @LickertHeiko @fabian_theis Congratulations Carina and all the other authors! 🎉

[Francesco Padovani @frank_pado]

You also canNOT wait to try out #Cellpose 3.0, right?

We've got you covered! We just added it to our #BioImageAnalysis software #CellACDC where you can choose which denoising model to run before segmentation and test the denoising in real time! @SchmollerLab

🧵👇

[Ciro Salinno @CiroSalinno]

@Tabdanov Awesome work! Congratulations 🎉! I was wondering if the UR214-9 compound is commercially available now?

[Ciro Salinno @CiroSalinno]

@bakhti_mostafa @pacotael @LamaSaber95 @LickertHeiko @Diana61204366 @AimeeBastidas Congratulations guys!! 🥳

[Ciro Salinno @CiroSalinno]

@SciImmunology @rafiahmed_lab @KamphorstAlice Very interesting! Any open access version of these papers?

[Francesco Padovani @frank_pado]

Do you want to try TAPIR, the new tracker by @DeepMind, on microscopy data? We just released it in our #BioImageAnalysis software #CellACDC (no code required) 🥳! At the moment only if you install from source, but it will be released on PyPi soon. Let's see what it is capable of:

[Ciro Salinno @CiroSalinno]

@NatMetabolism @AyyaKeshet @Lee_Reicher1 @NoamBar7 Thanks a lot!

[Ciro Salinno @CiroSalinno]

@frank_pado @MetaAI I tested it too. Works really well, despite the background issue. Looking forward to understand the parameters to optimize the segmentation.

[Ciro Salinno @CiroSalinno]

@fabrice_senger @fungalhyphae @ibidiCells That's very interesting. Unfortunately the link seems to be corrupted. Could you share it again?

[Ciro Salinno @CiroSalinno]

@stefanhahmann @haesleinhuepf @PoLDresden @FijiSc @Twitter @napari_imaging Thanks Stefan! Yes, I regularly use Arboretum but, to my knowledge, you can't really customize or export the trees afterwards.

[Ciro Salinno @CiroSalinno]

@marenbuettner Good luck for your new adventure in the US!

[Ciro Salinno @CiroSalinno]

Congratulations @KHrovatin ! What a wonderful job! Happy to have contributed to this fantastic resource with three of my scRNAseq dataset generated during my PhD time. Check the preprint out 👓

[Karin Hrovatin @KHrovatin]

How islet scRNA-seq atlas provides new insights beyond individual datasets?
See our comprehensive atlas analysis of β-cell responses to different stressors, providing a roadmap for the understanding of β-cell plasticity, compensation, and demise. https://t.co/loCO5HbjRx

[Ciro Salinno @CiroSalinno]

@mailfertSeb How did you get it? I want one @zeiss_micro