EvolCompGen

[EvolCompGen @EvolComp]

Thrilled to kick off EvolCompGen #ISMB2022 — welcome aboard!🎉

Stay tuned on @ISMBinfo Juno for talks/posters/panel disc.
🗓️Schedule: https://t.co/NEFFAMQcXS

Engage w/ COSI folks
- Join us on Slack: https://t.co/sWhrkU0K7R
- Twitter: @EvolComp
- Website: https://t.co/VRVLbhkRBt

[EvolCompGen @EvolComp]

EvolComGen presents the first @ISCB + @OfficialSMBE webinar of the year, on Evolution of gene duplication: From redundancy to dependency w/ Christian Landry!
Free registration: https://t.co/4ytRUhszef
Join us on Monday, March 23 at 11:00 AM EDT!

[EvolCompGen @EvolComp]

EvolCompGen presents an online talk: Sungsik Kong on Phylogenetic network estimation from site patterns using composite likelihood. Join us on Friday!

[Erin Molloy @erinkmolloy]

Mixed feelings about it being almost Nov -- but looking forward to @ISCB + @OfficialSMBE webinar on identifying transcription regulatory seqs & genes in coronaviruses w/ Mohammed El Kebir!

Log in: https://t.co/4iyaH1EpG3
Free account: https://t.co/2lxJ6g7dVR

[Janani Ravi @janani137]

Organizing a conference, symposium, or workshop?

Read this fantastic thread on our Ten Simple Rules to Host an Inclusive Conference!🎉
🌐Abstract in 11 languages @AsiaR_comm

It was a pleasure working with the diverse @_useRconf team & all the co-authors!
https://t.co/i9m1VD9Xyy

[Iddo Friedberg 💔𐤅‎𐤉𐤃‎‎𐤏‎ @iddux]

Epidemiology poll for #ISMB2022, open for the next 4 days. Please RT far & wide even if you were not at the conference.
Did you attend #ISMB2022 in person? If so, after the conference did you:

[EvolCompGen @EvolComp]

Panel starting now:
Aida, Dannie, Edward
~ moderated by @cdessimoz

#ISMB2022 #EvolCompGen @ISMBinfo

[EvolCompGen @EvolComp]

Please join the EvolCompGen community for our #ISMB2022 panel discussion in Room G.

Panelists:
@AidaOuangraoua
Dannie Durand
@EdwardLBraun1

[EvolCompGen @EvolComp]

Work with @ChikinaLab, @NathanClark111, @sergeilkp

[EvolCompGen @EvolComp]

Convergent trait evolution can help associated us identify similar genotypes that lead to similar phenotypes.

In our final talk of #ISMB2022, @averyselberg presents BUSTED-PH: a likelihood method to distinguish adaptive innovation from convergence.

[EvolCompGen @EvolComp]

With Lloyd Allison and Arun Konagurthu

[EvolCompGen @EvolComp]

After-lunch talks start soon!

Current models of sequence evolution disconnect substitutions and indels. Dinithi Sumanaweera gives their Proceedings Presentation bridging this gap to develop a unified statistical model for protein alignment #ISMB2022

https://t.co/Ktt7ed2BFV

[EvolCompGen @EvolComp]

Next up: @JRaviLab discuss their work integrating databases in an evolutionary and ML framework to gain insight into the origin and continuous adaptation of antibiotic resistance
With @Vigs_24, @joe_burke11, @elliotmajlessi, @KJongnarangsin, and
@compbiologist
#ISMB2022

[EvolCompGen @EvolComp]

Starting soon!

With Szymon Kielbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Leon Mei, Roberta Menafra, Susan Kloet, Hendrik Veelken, Cornelis A.M. Van Bergen, and @ewa_szczurek

[EvolCompGen @EvolComp]

Now speaking: @ShadiShafighi on their probabilistic model CACTUS to integrate
information from genomic cell clustering with transcriptome data of single tumor cells to map single cells to given imperfect genotypes of tumor clones.
#ISMB2022

[EvolCompGen @EvolComp]

Thank you everyone for your patience regarding our technical difficulties. Stick around at the end of the session as our first speaker, Ana Isabel Castillo Orozco, presents "Comparative Genomic Analysis of Primary Medulloblastoma and Leptomeningeal Metastasis"

[EvolCompGen @EvolComp]

Lipoxygenases synthesize products for cell-cell signaling in multicellular eukaryotes. What are they doing in bacteria? @KurakinEgor presents work on the link btw lipoxygenases, pathogenicity & symbiosis. Could bacterial lipoxygenases facilitate cross-kingdom host jumps?#ISMB2022

[EvolCompGen @EvolComp]

Next up: Aijing Feng tells us about avian pathogenic E. coli (APEC) and their work characterizing the genomic diversity found sampling poultry in the southern US.
Room: G
With Spencer Leigh, Hui Wang, Todd Pharr, Jeff Evans, Martha Pulido Landinez, Lanny Pace, and Xiu-Feng Wan

[EvolCompGen @EvolComp]

Join us as Wend Yam Donald Davy Ouédraogo presents TranscriptDB and their new method that considers alternative splicing to compute clusters of conserved transcripts for the reconstruction of transcript and gene phylogenies. #ISMB2022

With Abigail Djossou & @AidaOuangraoua

[EvolCompGen @EvolComp]

Highly promiscuous domains are hypothesized to be the result of high mobility. In our next talk, Yuting Xiao presents work probing this hypothesis looking at the correlation between promiscuity and rates of domain gain and loss.
#ISMB2022
With @MoStolzer and Dannie Durand

[EvolCompGen @EvolComp]

Paper: https://t.co/k27ASh285p

With: Yifan Xue, Collin McCormack, Alejandro Garces, Thomas Rachman, Yang Yi, @MoStolzer, and Dannie Durand

[EvolCompGen @EvolComp]

Simulation is an essential component of evolution research. We have a wealth of models for simulating species, genes, and sequences. But what about events affecting multidomain architectures? In her Proceedings talk, Xiaoyue Cui tells about their new simulation models. #ISMB2022