Functional Genomics Core Facility (FGCF)

Assisting the @IRBBarcelona community move forward their genomics and transcriptomics projects | genomics'at'irbbarcelona'dot'org | @freddymonteiro

[Functional Genomics Core Facility (FGCF) @FunGenCore]

🥰

[SCENTINEL-Twinning @IMBB-FORTH | v.theodorou @scentinel_eu]

SCENTINEL 1st Workshop 2-6 Sep.2024 @IRBBarcelona
Many thanks to Camille (IRB Bioinformatics) and Freddy (IRB Functional Genomics) and their team members, as well as to all IRB Admin personnel, for hosting a great workshop for @IMBB_FORTH and @IJMonod members

[SCENTINEL-Twinning @IMBB-FORTH | v.theodorou @scentinel_eu]

Welcome to SCENTINEL!
a Horizon Europe Twinning collaborative initiative between
@IMBB_FORTH (Delidakis lab, Lavigne lab, Genomics CF)
@IRBBarcelona (Bioinformatics and Functional Genomics CF)
@IJMonod (Konstantinides lab)
@IGBMC (Giangrande lab)
@Stockholm_Uni (Mannervik lab)

[Functional Genomics Core Facility (FGCF) @FunGenCore]

Help us achieve our goal: @IRBBarcelona Per molts anys! Fighting Mestastasis with Research and Knowledge. https://t.co/5bgVVAWwPf

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@IRBBarcelona want to learn more: https://t.co/DLfeyuW3B4

[Functional Genomics Core Facility (FGCF) @FunGenCore]

If you're using a NextSeq2000 from @illumina, you will likely appreciate the beauty in the plot ⬇️

P3. 100 cycles. 1,403,542,888 PE reads of @10xGenomics + custom libraries. Consistently🤩

@FunGenCore continues pushing technologies &
capacities to their limits!

[Functional Genomics Core Facility (FGCF) @FunGenCore]

And the same applies to P3 50 cycles, from which we squeezed 1,358,889,071 PE reads.

totalRNAseq + custom ribosome profiling libraries.

Yes! we can now analyze RPFs, through acceptance and collaboration with one of our research groups at @IRBBarcelona

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@M_NadalRibelles @IRBBarcelona @yocamilleyo @LarsMSteinmetz @Singleron_Bio @yeastgenome @yeast_papers 🥰

[Mariona Nadal-Ribelles @M_NadalRibelles]

Thrilled to share our latest preprint. We created a yeast single cell atlas of genetic x environmental perturbations of >3000 mutants. This has been my dream dataset for quite a while and we could not be happier to share it! 🥳🥳🥳

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@M_NadalRibelles @IRBBarcelona @yocamilleyo @LarsMSteinmetz @Singleron_Bio @yeastgenome @yeast_papers Congratulations, @M_NadalRibelles !!!

[Mariona Nadal-Ribelles @M_NadalRibelles]

Teamwork at @IRBBarcelona with @yocamilleyo and with @LarsMSteinmetz. Thanks to the @Singleron_Bio , @FunGenCore for all the help. We hope this can be interesting to the community @yeastgenome @yeast_papers and others. Link 👇👇
https://t.co/yE422Rs9DQ

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@eli_mereu @larsplus @AlejoFraticelli
Congratulations on another successful #ISCO conference! You did it again! The panel of talks was truly impressive, offering a wealth of ideas to take back to our teams and connections to explore further. Well done!! 🎉

[Freddy (de Oliveira) Monteiro @freddymonteiro]

Come join us at IRB to discuss available automated tissue dissociation capacities for consistent & efficient single cell assays with Singleron PythoN

Date: May 29
Time: 11:00 AM
Location: PCB, Room TR 1. Carrer Baldiri Reixac 10. 08028. Barcelona.

@Singleron_Bio @IRBBarcelona

[Sasha Gusev @SashaGusevPosts]

I've written about race, genetic ancestry, analyses of large biobanks, and human history

https://t.co/DogeRfUCdr

I'll summarize the key points here 🧵:

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@rmassonix 🔥🔥🔥 Curation at its best!!

[MultiQC @MultiQC]

MultiQC v1.20 is here, and with it come some huge updates! 😲 In this release we are switching to @plotlygraphs for all report graphs 📈✨ This is a massive change which paves the way for many improvements in @MultiQC reporting.

https://t.co/pjRhG5IysJ

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@BrantBassamPhD @coregenomics point taken and thank you for doting the i's.
The letter initiative and content should be the focus of the debate.

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@coregenomics @1CellBio do not know
my guess and understanding from conversations is that products are offered only to internal services.

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@coregenomics oh, and remember this?
https://t.co/iLjiLbBN6y

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@coregenomics James, the issues raised by those KOLs are not new. The aggressive legal and commercial battle is something many voiced out over the last years. KOLs always opted for 10x (and Illumina btw). They speak now, when their recent purch (CosMx or G400) suddenly shorten its lifespan

[James Hadfield @coregenomics]

That initial development was funded by the Knut and Alice Wallenberg Foundation (@KAWstiftelsen), at @SciLifeLab, who supports long-term, free basic research beneficial to Sweden. I’ve no idea what their IP policies are but this was probably not the outcome they were hoping for?

[Functional Genomics Core Facility (FGCF) @FunGenCore]

@coregenomics this seems like yet another battle of interests... at a different level/ground.

boiled down, the game needs to change for a greater good and beyond egos, fame, or market domination