Gregory J. Baker, PhD, PharmD

Cancer Systems Immunologist, Laboratory of Systems Pharmacology, Harvard Medical School (he/him/his). #glioblastoma #systemsimmunology #datascience

[RareCyte, Inc. @RareCyte]

The inaugural #ESSB conference begins tomorrow! ✨

Explore how the Orion platform delivers ultra-fast imaging with up to 20 channels per scan, providing whole-slide #spatialproteomic data for your large-scale studies.

📍Attend Session 8 and stop by Booth #21 to learn more!

[Laboratory of Systems Pharmacology @HarvardMedical @Harvard_Lab]

Starting shortly - it looks like a great line up of talks!

✨LSP postdoc Emmanuel Ogbonna will speak at noon!

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Spatial proteomics was just named "Method of the Year 2024" in the December issue of Nature Methods!

Honored for our spatial proteomics QC tool (CyLinter) to have been featured in this month's issue.

📄 Editorial: https://t.co/ONYTRHWR5z
📄 CyLinter: https://t.co/5P4eIBvcPA

[Luciano Martelotto 🛠🧬💻🇦🇺 @LGMartelotto]

Really huge…#spatialbio…a field that keeps on giving…took me a Saturday morning (Oz time) but totally worth reading these Methods To Watch!!

Baker, G. et al. Nat. Methods. https://t.co/C44P4t7Vun (2024).

Ma, C. et al. Nat. Methods
https://t.co/UOroyrrSyv (2024).
Article
 
Marx, V. Nat. Methods
https://t.co/cjyxjTWhYO (2024).

Bodenmiller, B. Nat. Methods
https://t.co/cxfyWxmeKL (2024).

Keren, L. & Bussi, Y. Nat. Methods https://t.co/XofX1pz2TA (2024).

Quail, D. & Walsh, L. Nat. Methods
https://t.co/xOAHKGhaen (2024).

Nordmann, T., Mund, A. & Mann, M. Nat. Methods
https://t.co/ZSPD7TClEf (2024).

Fan, R. Nat. Methods
https://t.co/3e0bo7VRho (2024).

Strack, R. Nat. Methods
https://t.co/ff5GEwCrNS (2024).

[Nature Methods @naturemethods]

The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳

For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread.

https://t.co/phXooJzJda

[TissueGnostics Asia @TissuegnosticsA]

Quality Control Innovation in Digital Pathology: From CyLinter to StrataQuest

As multiplexed imaging methods advance, ensuring data quality becomes crucial.

📷 CyLinter - New open-source tool
📷 StrataQuest - Industry-leading platform
https://t.co/TQwpOG6oyh

[New Scientist @newscientist]

A massive project to map the cells within cancer tumours is providing new insights into how the disease evolves and becomes resistant to treatments. https://t.co/wSEI95Y3mK

[Nature Methods @naturemethods]

Out yesterday from Baker, Sorger, and colleagues, comes CyLinter--quality control software for high-plex tissue profiling. https://t.co/Y2QRofM3DS

[Nature Methods @naturemethods]

We welcome you to peruse the cross-journal collection of papers from the Human Tumor Atlas Network that were published today! https://t.co/hVVREhrjTK

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Excited to share our new manuscript titled, "Quality Control for Single Cell Analysis of High-plex Tissue Profiles using CyLinter", out now on bioRxiv (https://t.co/ViqDb3Q0X7). Details on this open-source software program can be found at https://t.co/jalKpvHJAp.

[Tuulia Vallius @TuuliaVallius]

Thank you #HTAN2023 #NCI for all the support and this great opportunity to present our work! @HiTSatHarvard @harvardmed

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Honored to have been invited to present our work on segmentation-free cell state inference using variational autoencoders at the @HTAN Spring F2F meeting!

[Jennifer Guerriero, PhD @JennGuerriero]

THANK YOU to fantastic faculty that participated in the first @sitcancer Spring Scientific #Spritc meeting. Grateful to faculty, speakers, participants & phenomenal co-chair @JenWargoMD for making it such a success. 2023 talks and 2024Spritc info: https://t.co/OWDzS6LEN4

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Honored to have been invited to speak during the "Integrating Spatial-Omics in IO/Single Cell Analysis" section of the SITC 2023 Spring Scientific conference in Denver! #SPRITC #Immunotherapy #spatialbiology. Huge shout out to @JennGuerriero and @JenWargo…https://t.co/R8FmUzT96S

[Jennifer Guerriero, PhD @JennGuerriero]

Kicking off day 2 of the @sitcancer Spring Scientific with The Impact of Gut, Tumor and Other Microbes on Cancer Development and Therapy Response. Chaired by Drs. Overacre-Delgoffe @OveracreLab and Zitvogel. 🤩
Still time to join us virtually.

https://t.co/OWDzS6LEN4

[Jennifer Guerriero, PhD @JennGuerriero]

“Communication is key to success”. Wisdom from Dr James Gulley @gulleyj1, deputy editor of @jitcancer, on publishing. We are grateful for your mentorship & dedication to the next generation of scientists. Career development session @sitcancer Spring Scientific #spritc

[Society for Immunotherapy of Cancer @sitcancer]

The SITC Spring Scientific has begun. SITC is honored to have Douglas Hanahan, PhD, start the event with his Keynote - Mechanisms and Functional Disruption of Immuno-Evasive Barriers in the TME. Get ready for a full day of cutting-edge science. https://t.co/YcuhPlnuTg #SprITC

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Huge shout-out to the organizers and presenters at this years' NIH Junior Investigator Atlas Builder's Meeting. I really enjoyed hearing about the science being done across the different consortia (#HTAN, #_hubmap, #PECGS, #KPMP, #GUDMAP, #CZI) and the fi…https://t.co/8ZRqHIg5Qk

[Gregory J. Baker, PhD, PharmD @GregoryJBaker1]

Huge congratulations to Giulia Notarangelo, Marcia Haigis, and the highly collaborative team of scientists that came together to make this study on the effect of oncometabolite D-2HG on CD8+ T cell function possible! Also check ou…https://t.co/ZFFM7M80Ka https://t.co/kBacJA4c4O

[Laboratory of Systems Pharmacology @HarvardMedical @Harvard_Lab]

New work from the @HaigisLab's @mela927 describes how a metabolite released by IDH-mutant tumor cells rewires the metabolism of nearby T-cells, impairing their ability to kill cancer cells. Check it out in @ScienceMagazine!
https://t.co/wczKnWBo1j