Haridha Shivram

Bioinformatics Scientist @Genentech Postdoc @doudna_lab @igisci. PhD @UTAustin - Host-pathogen interactions and Genomics. Views are my own.

[Anshul Kundaje @anshulkundaje]

I'm making an open offer to any compbio grad students/postdocs who are aiming for faculty positions. If you have strong impactful research but no glam pubs & need someone to advocate for you, please get in touch. I promise u, I & a bunch of other faculty will strongly support u.

[Amy R Eggers @AmyReginaEggers]

I am excited to share that our paper “Rapid DNA unwinding accelerates genome editing by engineered CRISPR-Cas9” from @doudna_lab is out in @CellCellPress!
https://t.co/rsf4BLjzyj

[Haridha Shivram @H_Shivram]

@AmyReginaEggers @doudna_lab @CellCellPress Congrats Amy!!

[Vishal Misra @vishalmisra]

Move over Chai Tea - we have a new winner!

[Rahul Satija @satijalab]

As my lab develops Seurat, I wanted to share some thoughts on the important Seurat and scanpy package selection preprint from @Josephmrich/@lpachter 🧵

[Luis E. Valentín-Alvarado @luisarchaeota]

Dedicated to my mom, the strongest woman I know. As a single mother, you’ve given everything to see me succeed. I’m honored to be the first in our family to earn a doctorate. This PhD is not just mine, it’s ours. Thank you for being my rock. #FirstGeneration #DoctorMom

[Ben Adler @ben_a_adler]

Hachiman is hot off the (preprint) presses! @owen_t_tuck and I in @doudna_lab present a model for how this broad-activity defense system recognizes genome integrity, a core feature of phage infection.

Check out the preprint and Owen's thread for the news:

[Jeremy J Barr @JeremyJBarr]

Our latest work, out today in @PLOSBiology suggests that not only do mammalian cells absorb bacteriophages, but they appear to use them as a resource to enhance growth!

https://t.co/6oGAXcD4Jp

This work was led by @marion_bichet and out on World Phage Week! #WorldPhageWeek

[Tina Liu @tinaliu_phd]

Excited to share that I recently started a faculty position in the @RutgersNB MBB dept and the @RutgersCABM! My new lab will explore the fascinating biology of microbial defense pathways and engineer them for applications in human health & medicine.
https://t.co/ce3MbIUHJr

[Connor Tsuchida @connortsuchida]

Very excited to see our paper with @doudna_lab @yimmieg @carlhjune @HowardYChang @BrandesNadav out in @CellCellPress !! Obligatory tweet-orial (X-torial??) coming soon...

https://t.co/8TE5ssCKjm

[Vivek Mutalik @vivek_mutalik]

Some crazy cool 3 papers on phages & dCas13

https://t.co/G1ngJP2Zts

https://t.co/rgkv85bzM6

https://t.co/h854U6fo3y

[Nature Reviews Genetics @NatureRevGenet]

Transposable elements: McClintock’s legacy revisited https://t.co/CU9UnAkMxG #Perspective #Essay by @cedricfeschotte

[Brady Cress @bradyfcress]

🚨Thrilled to unveil Cress Lab's 1st pre-print! In work co-led with my former @doudna_lab-mates @ben_a_adler & Muntathar Al-Shimary, we establish a phage functional genomics platform to characterize the genomes of diverse lytic phages. 🧬https://t.co/cQJe3wTFqW
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[Ben Adler @ben_a_adler]

I’m really excited to share our new pre-print “Genome-wide Characterization of Diverse Bacteriophages Enabled by RNA-Binding CRISPRi”, with co-first author Muntathar Al-Shimary @doudna_lab and the newly-minted @bradyfcress lab!
https://t.co/KWg8FAUhLJ
🧵🧵
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[Cedric🧬➰🧬Feschotte @CedricFeschotte]

💥Excited to unleash ENCOTE: Encyclopedia of Transposable Elements with cis-regulatory activity in the human genome!
Collab w @twang5 for #ENCODE led by🔥trio Alan Du, Jason Chobirko & @XiaoyuZhuo
TEs = 25% of all cCREs = 200,000+ elements!!
Deep dive! 1/n https://t.co/t9xacOAOAQ

[Basem Al-Shayeb, Ph.D. 🧬 @themicrobeguy]

🚨 Today, we’re thrilled to share our study expanding the gene editing toolbox to enable virtually any kind of edit in gene transcripts at the order of thousands of bases. A thread 🧵👇(1/n)

https://t.co/zA4EyAVHFQ

[Jay Shendure @JShendure]

Seminal technical advance from @ElowitzLab. Opens up so many possibilities!

[Haridha Shivram @H_Shivram]

@AbbyLabbyUC @EliLillyandCo @doudna_lab @igisci Congrats Abby!

[AbbyLabby @AbbyLabby_]

Excited to share this pre-print on recent developments in non-viral delivery of CRISPR-Cas9 to the mouse brain, following up on work from the @doudna_lab published in 2017 https://t.co/C3xnpTAKGz

[Avigail Stokar-Avihail @AAvihail]

I am excited to share with you the final version of my work @SorekLab studying

💠How bacterial immune systems sense phage infection💠

Published now in @CellCellPress🍻
https://t.co/HZYdOoHc5f

See thread below for a recap and highlights added during the review process ⬇️
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