Hiren Ghosh

Business Consultant @Boehringer Ingelheim - Bioinformatics | Research, Development & Medicine

[Hiren Ghosh @HirenGhosh]

The AI revolution is running out of data. What can researchers do? https://t.co/oI7LcswKWm

[Hiren Ghosh @HirenGhosh]

Great news! Our new paper suggests a faster, more accurate strategy for discovering beneficial viral changes prior lineage classification. This development may improve pandemic response and reduce healthcare costs. ���🦠 #COVID19 #PublicHealth

https://t.co/0kmmTlrNHX

[Hiren Ghosh @HirenGhosh]

Falling behind: postdocs in their thirties tire of putting life on hold https://t.co/qxRem7w4p7

[Hiren Ghosh @HirenGhosh]

How a controversial US drug policy could be harming cancer patients worldwide https://t.co/3kp6COFaRL

[Lee Katz @[email protected] @lskatz]

🚀 Unleash the need for speed with the sizzling hot Mashtree v1.4 update! ⚡️ Experience the thrill of faster performance as we bid adieu to the sqlite dependency and usher in a sleeker codebase. 📦Share your thoughts on GitHub issues. ✨💻 Update now: https://t.co/OEPycwiJdI 🌐

[andrea telatin @telatin]

A hybrid workflow for high quality phage genome assembly by @Clarika84 is now out 🧵
https://t.co/23aeIKsCVB

[nf-core @nf_core]

Pipeline release! nf-core/taxprofiler v1.0.1 (Highly parallelised multi-taxonomic profiling of shotgun and long-read metagenomic data)

See the changelog: https://t.co/eJbuLUddX2

[Lauren Ball @ProfLaurenBall]

Writing a great abstract can be tricky! This writing template by @Nature is super helpful 👉

[Chris Ruis @Chris3Ruis]

🚨 Our new preprint is up 🚨

https://t.co/2XxmZMVOGK

We show that mutational spectra enable inference of local SARS-CoV-2 replication niche within the respiratory tract

Thread below 🧵 1/10

[Lee Katz @[email protected] @lskatz]

I made a perl module for submitting to the SGE scheduler. In 2013. I forgot if I ever shared it and I have no idea if it's helpful to anyone. https://t.co/ImT7JkLZdT

[Rosana Ferrero 📈📊🙌 @RosanaFerrero]

🤩 ¡TOP consejos sobre cómo usar los colores de manera efectiva en tu visualización de datos!
🔗 https://t.co/rG3phAg96k
💬 ¿Conoces más recursos para mejorar tus #dataviz?
👤 @alicjagosiewska @hbaniecki RT Indrajeet Patil
#DataScience #python #rstats #BI #sql #datos #analytics

[Marc Johnson @SolidEvidence]

Convergent evolution on steroids, v5. Was missing BA.2.3.20. Modified version of @dfocosi's illustration.

[Nabil-Fareed Alikhan @[email protected] @happy_khan]

If you're using Minimum spanning trees on cgmlst data, why not give neighbor joining a go. Trust me ;)

Use https://t.co/TliuMLMJ3T

To convert allele tables for distance . Then built tree with https://t.co/7qaavWfNfV

#IMMEMXIII

[Andrew Page @andrewjpage.bsky.social @andrewjpage]

The 8th Microbial Bioinformatics Hackathon is a wrap. Wonderful 3 days bringing experts together to tackle open challenges in the community. Most are now off to #IMMEM

[Taylor Reiter @ReiterTaylor]

🎉 New tutorial 🎉 Ever wanted to go from raw metagenome reads to a handy taxonomic table like the ones in phyloseq or speedyseq? Sourmash gather & sourmash tax get you there quickly and accurately 🏃‍♀️ 💯 https://t.co/2ySJP72it9

[Stephen Turner 🦋 @stephenturner.us @strnr]

SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array https://t.co/wP4xZGaLsE https://t.co/wcvmRQda2d

[Rahul Satija @satijalab]

We've released an Azimuth API that lets you process, map, and annotate your scRNA-seq dataset with a single R command. Just needs the raw counts matrix as input, and accepts Seurat objects, AnnData (h5ad), or hdf5 files.

Check out the vignette at: https://t.co/1ZF9cIG0rM

[Stephen Turner 🦋 @stephenturner.us @strnr]

SNPfiltR: an R package for interactive and reproducible SNP filtering https://t.co/klnLLAq7Mr https://t.co/hAOIwp3K5H

[Hiren Ghosh @HirenGhosh]

Happy to share our latest #Preprint on @bioRxiv:
: Iron regulates contrasting toxicity of uropathogenic Eschericia coli in macrophages and epithelial cells. https://t.co/2crsCtdiJz

[Mike Vella @vellamike]

Announcing preview version of Dorado! https://t.co/OPJOBhbwfI - An Open Source, Libtorch-based basecaller I have been working on @nanopore. Support for @apple #M1, @NVidia GPU, x86. @pytorch C++ API.