The Hodges Lab

Research group in Biochemistry and Human Genetics at @VanderbiltU - Our research strives to understand how epigenetic features shape human genomes 🧬🧫🔬

[The Hodges Lab @Hodges_Lab]

Interested in how DNA HYPO-methylation records cell histories? Check out our new pre-print! Big congrats to first author @TJSScott and co-authors @hansen_tylerj @EvonneMcArthur https://t.co/uOvUVAzyzL

[Ken Lau Lab @KenLauLab]

Excited to be part of this exciting initiative in systems biology, data science, and AI:

https://t.co/3Fg1pKoUCT

[Sho Goh Lab @ShoGohLab]

Achievement Unlocked! @huihuian521, our 1st PhD student’s 1st 1st-author paper! Out now in @MolecularCell 🧵
We identify the 1st m6Am Reader and uncover a novel and unexpected mechanistic role for this abundant yet enigmatic mRNA modification. (1)
https://t.co/bVVVKNlXV7

[The Hodges Lab @Hodges_Lab]

@Frederique_NYC Thank you for attending!

[Ken Lau Lab @KenLauLab]

The Center for Computational Systems Biology at Vanderbilt is conducting a search for junior faculty (s) in the field of computational biology. It is a great opportunity for young investigators to tap into relatively large human data resources here.

https://t.co/Sv3tyix1kQ

[Elphege Nora Lab at UCSF @ElphegeNoraLab]

First preprint from the lab 🚨

How can enhancers regulate target promoters across vast genomic distances, and what is the role of cohesin loop extrusion in the process?

https://t.co/l7bwPsTSkd

(1)

[The Hodges Lab @Hodges_Lab]

@Ella_Maru @GuerinLindsey @IhrieLab @KenLauLab Great question! We may need higher resolution of 5-hmC timing to know the answer for sure (not to mention a more direct measure of enhancer activity) but it's certainly possible.

[The Hodges Lab @Hodges_Lab]

In this new preprint, we do a deep dive into the temporal relationship between DNA #methylation, #chromatin and #enhancers. Amazing work by first author @GuerinLindsey and thanks to our collaborators @IhrieLab, @KenLauLab, & biomodal. https://t.co/KpU6gvjJ67

[The Hodges Lab @Hodges_Lab]

@sproul_lab @GuerinLindsey @IhrieLab @KenLauLab Thanks Duncan!

[The Hodges Lab @Hodges_Lab]

@serialChIPer @GuerinLindsey @IhrieLab @KenLauLab Thanks a lot! Any feedback welcome.

[The Hodges Lab @Hodges_Lab]

@maxvcg @GuerinLindsey @IhrieLab @KenLauLab Thank you!

[Maxim Greenberg @maxvcg]

The version for *posterity* is out @NAR_Open! Congrats to lead authors @AnaMonteagudo4 & @jrichardalbert, our friend/collaborator @DaanNoordermeer & engineer extraordinaire Margherita Scarpa! Findings largely intact, but short 🧵 on changes since preprint https://t.co/C0LbQE4gob

[The Hodges Lab @Hodges_Lab]

@joadelas @LMCB_UCL Congratulations!!!

[The Hodges Lab @Hodges_Lab]

Congratulations Dr. @TJSScott on your successful defense and stellar presentation of your recently published work on DNAme patterns as cell histories https://t.co/5dGa1HrQJZ

[Vanderbilt Biochemistry @VandyBiochem]

Don't forget - Tim Scott from the @Hodges_Lab will be defending his thesis tomorrow (Wednesday, Nov. 15th)! 1:00 PM in 214LH!

[Aaron Quinlan @aaronquinlan]

Hi all, we just dropped version 2.31.1 of bedtools, which addresses some compilation issues encountered with GCC 13. Many thanks to @jomarnz for the key patch and for the many users who reported this issue!
https://t.co/RlPIGF95XU

[The Hodges Lab @Hodges_Lab]

@aaronquinlan When are you coming to Nashville?!

[The Hodges Lab @Hodges_Lab]

@VandyStem Thank you!

[Vanderbilt School of Medicine Basic Sciences @VUBasicSciences]

CONGRATULATIONS 🎉 to all our graduates who walked at yesterday’s #VU2023 ceremonies, and to all those who graduated but didn’t walk! 🍾🎉

📸: @hansen_tylerj, @Hodges_Lab, @Poke_PhD, @Topo_Lab, @Kevin_Childress, @CassandraAwgu, Megan Aumann
#vandygram

[Vanderbilt Biochemistry @VandyBiochem]

This week's special edition of the Frontiers Seminar Series will feature our very own @alexmblee and @hansen_tylerj, both recipients of prestigious departmental awards! Join us Friday at noon in LH 214, light refreshments will be provided beforehand.

[Evgeny Kvon @evgenykvon]

Only 4 days left to submit an abstract for a short talk consideration at our SDB Enhancer symposium on July 20 in Chicago. We have an exciting lineup of invited speakers: @LCochella ,@EKFarley ,@Hodges_Lab , Yana Kamberov, @MustafaMir16 and Alex Nord #2023SDBEnh @aburger2009