Julio Saez-Rodriguez

Computational Biologist, Head of research @emblebi, part-time @UniHeidelberg, codirector @DR_E_A_M challenges. Low-activity account, mostly retweets @saezlab

[Saez-Rodriguez Group @saezlab]

We present NetworkCommons, a unified platform 🪐 for network biology, providing access to omics data, knowledge, and contextualization methods, all with a consistent API 👇
Paper: https://t.co/Fm6FEHQcl2
Docs: https://t.co/Sw6CskluRu

[Saez-Rodriguez Group @saezlab]

Congrats to @teichlab @humancellatlas We are happy to have contributed a bit to https://t.co/8q8YuXoBvl, improving robustness of scAutoQC @slobentanzer, & cell-cell communication analyses @DanielBDimitrov with LIANA+ (https://t.co/MsFr5uWCJi), supervised by @juliosaezrod

[Saez-Rodriguez Group @saezlab]

What are the key disrupted multicellular processes in heart failure? In our new work we combine 23 years of molecular data with recent single-cell atlases to draw a cross-study patient map. How did we navigate the heart failure space? 🧵⬇️
https://t.co/aRDqdQxC5j

[EMBL-EBI @emblebi]

Are you a student in France studying computer science, statistics, or bioinformatics?

@FranceintheUK has opened a new round of internships hosted at EMBL-EBI.

Find out more and apply.

https://t.co/o9QdzfUKyn

[Julio Saez-Rodriguez @JulioSaezRod]

Welcome @TimCoorens to @emblebi ! Looking forward to working together; Tim is hiring postdocs 👇 #emblebiresearch

[Tim Coorens @TimCoorens]

Very happy and excited to announce that I'll be starting my own research group at @emblebi! The group will focus on lineage tracing, somatic evolution and the origins of cancer. Interested in doing a postdoc in the group or know someone who is? Please reach out!

[Saez-Rodriguez Group @saezlab]

📢 Introducing CORNETO: a unified, knowledge-driven framework for multi-sample network learning & modeling via constrained optimization, supporting a wide variety of network methods and prior knowledge

💻Code: https://t.co/OuM9Acrs9U
📜Paper: https://t.co/XFjEbKMAAL

🧵👇

[Saez-Rodriguez Group @saezlab]

Our work with @schirmerlab in multiple sclerosis (MS) is out today in @NatureNeuro. We investigated lesion progression and cell-cell communication events in MS using snRNA-seq and spatial transcriptomics 🧠 See below ⬇️
https://t.co/j6LIwv4IgU

[Saez-Rodriguez Group @saezlab]

We're hiring! Join @saezlab as a Staff Bioinformatician at Heidelberg University- Work on multi-omics data in heart disease research (CRC 1550). PhD in computational biology or relevant experience required. 📅 Apply by Nov 18, 2024. https://t.co/LSp9NLwCUT

[Saez-Rodriguez Group @saezlab]

How good is our understanding of signaling pathways? In this study together w/ @savitski_lab @EMBL, we combine multiple state-of-the-art resources to evaluate signaling pathway inference using phosphoproteomics and kinase-substrate networks https://t.co/T2iIKGYuiZ

[Saez-Rodriguez Group @saezlab]

Kidney fibrosis as a molecular process is poorly understood. In this new study together w/ Pepperkok lab @EMBL, we present a time-resolved #multiomics + computational network modeling approach in combination w/ phenotypic assays to study #kidneyfibrosis https://t.co/9I1axrjUYl

[Saez-Rodriguez Group @saezlab]

We're also hiring a Research Software Developer. Join us to redesign @omnipathdb and work with Postgres, Python, TypeScript & more) in systems biomedicine. PhD or relevant experience in engineering, CS, or computational bio required. Apply by Nov 18, 2024. https://t.co/IEz8DxzzSU

[Saez-Rodriguez Group @saezlab]

Post-doc opening to join our lab @emblebi #EMBLEBIresearch to develop/apply #bioinformatics methods to study cellular organization, int/extra cell networks to extract disease mechanisms from sc and spatial multiomic data, with @YvanSaeys, supp by @CZI 👇https://t.co/c6aecDDZ55

[Saez-Rodriguez Group @saezlab]

🫀Check out our new study on fibrosis in HFpEF, a result of great team effort with the @LeuschnerLab #heart

[Saez-Rodriguez Group @saezlab]

👉Consider joining us for a post-doc at @emblebi & @ASTRAZENECAUK as part of the EAZPOD program to study multicellular mechanisms associated with #cancer treatment resistance! #postdoc
https://t.co/Pfyp0P1fEf

[EMBL-EBI Jobs @EMBLEBIjobs]

Postdoc Opportunity. Join the Saez Rodriguez group! Develop computational methods to explore cellular organization & disease mechanisms using multi-omic data. #Postdoc
https://t.co/lpvhPtGKEW

[EMBL-EBI @emblebi]

🚨Closing soon:
ESPOD fellowships in collaboration with @sangerinstitute - the perfect opportunity to combine experimental & computational approaches for cutting-edge life science research!

🗓️Deadline 29 September

Explore funding, themes and timelines👇
https://t.co/Qe3NZV7YfY

[Saez-Rodriguez Group @saezlab]

Check the latest @DR_E_A_M paper, evaluating methods to deconvolve cellular composition from bulk gene expression, with contributions from our (former) @alvaldeolivas & @JulioSaezRod 👇

[Julio Saez-Rodriguez @JulioSaezRod]

Still time until 15th September to submit an abstract to join us in Berlin in the @SpatialBio conference 👇

[European Society for Spatial Biology @SpatialBio]

Important information: The abstract deadline for the ESSB conference (December 12/13 2024) has been extended. It is now possible to hand in your abstract until September 15th!
Submit and become part of the ESSB community!
#spatialbiology #ESSB

[Julio Saez-Rodriguez @JulioSaezRod]

Looking for a PhD? Take a look at @embl programme. Among many cool projects, we are recruiting @emblebi, including one position to study host-microbiome interactions in the gut, an @ERC_Research project w @giacomello_lab @ejvillablanca @ZellerGroup

[EMBL @embl]

Applications for the EMBL International PhD Programme are open! 👀

The programme offers fully funded PhD positions at EMBL’s six sites across Europe 🌍

Have a look at this opportunity to start your career in the life sciences here:
https://t.co/wlj1i614ey

[Saez-Rodriguez Group @saezlab]

📣 The much-revised manuscript of LIANA+, our all-in-one solution to study cell-cell communication from single-cell, spatial, and multi-omics technologies, is now published in @NatureCellBio https://t.co/KkHX3GVLn1