Monarch Initiative

LinkedIn: curating genotype-phenotype knowledge #OpenScience #Collaborative #Data

[Monarch Initiative @MonarchInit]

Twitter/X no longer aligns with our values; we are intentionally choosing to communicate about our work using other media. More info (including where to find us): https://t.co/BESnVuEtvH

[Chris Mungall @chrismungall]

https://t.co/RWxcULUz1f read about our @MonarchInit Chat GPT plug-in over on the non X site!

[CU Department of Biomedical Informatics (DBMI) @CUBiomedInfo]

Shawn O’Neil, PhD, MS, assistant research professor in @CUBiomedInfo and member of the @MonarchInit, was recently featured in @GenomeWeb to discuss how #artificialintelligence fits into the world of genomics.
https://t.co/5KrZwFvKjG

[NIH ORIP @NIH_ORIP]

New video! 🚨

Hear firsthand how @mattmight at @uabprecisionmed used the @MonarchInit resource and ultimately shortened his son's diagnostic and therapeutic odyssey. (ORIP support through R24OD011883) #ORIPResources
https://t.co/tFhfVNUqVR

[OHDSI @OHDSI]

A Simple Standard for Sharing Ontological Mappings (SSSOM) Workshop for OHDSI Europe #OHDSISocialShowcase #JoinTheJourney

Lead: Nicolas Matentzoglu
Co-Author: Melissa Haendel

Full Poster: https://t.co/HiJvAxP5tq

[GigaByteJournal @GigaByteJournal]

Our Board Member @monimunozto presenting in #BOSC2023 on standards to connect biomedical and behavioral data to AI in the Bridge2AI program #ISMBECCB2023

[Peter Robinson @pnrobins]

@MonarchInit @hp_ontology The long-awaited manuscript on MAxO is out today! https://t.co/2xAfuwz1C9

[Monarch Initiative @MonarchInit]

A huge congratulations to @NicoMatentzoglu for winning the International Society for Biocuration’s Excellence in #Biocuration Advanced Career Award! We are so proud of you! @biocurator https://t.co/ZpxSgYJh1O

[Chris Mungall @chrismungall]

We added a howto guide to the @linkml_data docs on generating AI prompts from LinkML schemas. https://t.co/ahS35Db6oI, making use of the new feature in the @OpenAI API to structure results as JSON https://t.co/MQ9Obxandz 🧵

[Fan Li @FanLi_RnD]

The OntoGPT framework and SPIRES tool by @chrismungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. https://t.co/t6AlXnp3HR

[Arjun Krishnan @compbiologist]

This work would not have been possible w/o the incredible effort of the model organism databases (@mgi_mouse, @ZFINmod, @FlyBaseDotOrg, @wormbase, & @yeastgenome) and pan-species resources like @alliancegenome and @MonarchInit.
[13/n]

[Monarch Initiative @MonarchInit]

Join us in celebrating our new #collaboration with the @CPathInstitute! Learn more about our work to improve #drugdiscovery for #rarediseases here:
https://t.co/tO8SirIRQq
#teamscience #translationalscience #healthcare

[Monarch Initiative @MonarchInit]

Monarch’s very own @NicoMatentzoglu is nominated for the Excellence in #Biocuration Advanced Career Award through @biocurator! Voting is open today through 6 June 2023! https://t.co/D2EesUBmrd
#careerexcellence #weareproudofyou

[Chris Mungall @chrismungall]

Are #LLMs capable of interpreting the results of high-throughput genomics experiments? Given a list of genes (e.g. all genes over expressed under a certain condition), can an LLM tell us what those genes have in common, suggesting underlying biological mechanisms? 🧵

[Monarch Initiative @MonarchInit]

#Exomiser ranks potential rare Mendelian disease-causing #variants from whole-exome or whole-genome sequencing data. Learn more here: https://t.co/vL2wtBzwqk
#RareDisease #OpenScience #BigData #Collaborative #TranslationalScience #Disease #Genomics #Healthcare

[Monarch Initiative @MonarchInit]

The @MonarchInit Biolink Model Brings Data Together! Find out more about our top 3 most downloaded papers in 2022 from the journal ASCPT here: https://t.co/L3AdVZVTCz
#BiolinkModel #TeamScience #Collaboration #RareDisease #DrugRepurposing #TranslationalScience @linkml_data

[Monarch Initiative @MonarchInit]

Find the link to @chrismungall's SWAT4HCLS 2023 conference Keynote on our Mastodon account here: https://t.co/tz5ZwJsHgg

[Monarch Initiative @MonarchInit]

TOMORROW! Don't miss @monimunozto's presentation about Monarch Initiative's data reuse practices as part of the session “Connecting Phenotypes and Genotypes Using Data Science”, Apr 25 1:15–2:00pm ET.
Free registration: https://t.co/5fLxNhXgqs

[Monarch Initiative @MonarchInit]

Join Monarch and other DataWorks! Prize recipients at a free online symposium (organized by @NIHDataScience and @FASEBorg) on April 25 about best practices in data sharing and reuse! #OpenScience #OpenData #DataReuse
https://t.co/shZILtUmK3 @monimunozto

[Liz Worthey @lizworthey]

Interesting use of GPT to build structured knowledge bases from unstructured text using Large Language Models. ⁦@chrismungall⁩ et al https://t.co/nyCqLBkfDx

[Irene López Santiago @IreneLopSci]

@andrewwhite01 you asked me the other day about ontologies. This, from folks at @MonarchInit, is a great example of how useful they can be as a cookie-cutter to an LLM. https://t.co/MOEVgQqgBK