Noé C

Staff Research Associate | Grape Genomics @ucdavis @UCDVEN
#grapevine #comparativegenomics #tidyverse #rstats

[Noé C @NCochetel]

Delighted to see our work making the cover of G3: Genes|Genomes|Genetics @CantuLab @USGSA.
Diploid chromosome-scale assembly of the Muscadinia rotundifolia genome supports chromosome fusion and disease resistance gene expansion during Vitis and Muscadinia divergence.

[Noé C @NCochetel]

@KaiV_F @hsgeisenheim @HannahMRobin @PAGmeeting It was very nice to meet you guys, great talks! 🍇

[AnaConesa @anaconesa]

Proud of @Conesa_Lab and @MSCActions @LongtrecEU amazing doctoral candidate @Tian_Yuan_Liu for this timely and comprehensive review on how #LongReadSequencing can profile the epigenome to reveal complex chromatin states. Published today in @NatureGenet. https://t.co/yg8yMxfvOA

[Dario Cantù @CantuLab]

New preprint from the lab https://t.co/lD8p6YKHee describing the conservation of the grape sex determining region (SDR) across angiosperm genomes and detailed history within Vitaceae leading to dioecy in Vitis and Muscadinia. Collaboration with @shiversherlock

[Hannah Rae Thomas Ph.D. @HannahRaeThomas]

I'm excited to announce I am hiring! Together we can investigate how abiotic and biotic stress affect grafting!
If you have any questions about working/living in China, please reach out.

[Andrea Guarracino @AndresGuarahino]

If you're not yet "building #pangenome graphs" to analyze your #pangenomes, now is the time to start and unlock #pangenomics true power!

[bioRxiv Genomics @biorxiv_genomic]

An atlas of conserved transcription factor binding sites reveals the cell type-resolved gene regulatory landscape of flowering plants https://t.co/jnbYw5K0wQ #biorxiv_genomic

[Noé C @NCochetel]

@biorxiv_genomic Congrats @abramocruz and co, impressive work.

[Dario Cantù @CantuLab]

We're hiring an Assistant Professor in Sensory Science to join the Viticulture and Enology department at UC Davis.

https://t.co/iWiK1tJt5C

[Matthias Benoit @Matt_Ben_]

🚨 Excited to share this #preprint from my postdoc in the Lippman lab @CSHL, in collab. with @mike_schatz & many others! Using pan-genomics & pan-genetics across the Solanum genus 🍅🥔🍆 we reveal gene duplications 🧬 as contingencies in crop engineering. https://t.co/lJbBzbhADU

[Brady Lab @bradylabs]

Dear plant biologists - does anyone have Gellan Gum from Spectrum Chemical that they would be willing to share? We are doing a 10 month experiment and mid-way through the company will only now sell this in industrial quantities. If so - please DM me, pretty please!

[Gautam Shirsekar @gaushi]

We constructed a pangenome graph with #pggb @erikgarrison to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"

[Trends in Genetics @TrendsGenetics]

Our July issue is live! https://t.co/799H5ctMk8

The cover image is from Dario Cantù (@CantuLab), who reviews “the wild side” of @grapegenomics. Recombination loss in sex chromosomes, functional genomics at scale, camouflage genetics, and more are also reviewed in the issue.

[Dario Cantù @CantuLab]

Our take on @TrendsGenetics of the recent genomic research on wild grape species: a story of plant collection, diploid genomes, graph pangenomes, domestication, flower sex, biotic and abiotic stress resistance, and community data sharing @grapegenomics - https://t.co/nyqPXOZfzY

[Pascal Martin @PgpMartin]

📢 We are looking for a motivated candidate for a fully funded #PhD to analyze the #transcriptome of polyploid cells from tomato fruit 🍅 at the single cell level #scRNAseq
@INRAE_BFP @nathy_go_7
Info here 👇
https://t.co/gXkYUl5dEN

[AnaConesa @anaconesa]

I´m thrilled to see our #LRGASP paper published in @naturemethods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to @FJPardoPalacios and @TheBrooksLab (1/6)
https://t.co/xdLwq3LvLU

[inrae_egfv @UMREGFV]

A special issue about Grapevine ! Please submit your manuscript ! @INRAE_France @univbordeaux @isvv_bordeaux
https://t.co/sXzueF6Th6

[Heng Li @lh3lh3]

Our review paper on "Genome assembly in the telomere-to-telomere era" published online in @NatureRevGenet. It amazes me how much assembly has progressed in the past four years – often ~100X improvement in contiguity and base accuracy and with haplotypes and hard regions resolved!

[Nature Reviews Earth & Environment 🌈 @NatRevEarthEnv]

🚨New Review!

Grapes produced for wine-making are highly susceptible to changes in climate, such as extreme heat & drought 🍇🍷

This Review explores the changing geography of wine production and recommends adaptation measures for growers and consumers

https://t.co/Yrw9k9KUvn

[Noé C @NCochetel]

@PacoDelmotte @ucdavis @CantuLab It was a pleasure to meet you and chat with you François, hope to see you again!

[Brady Lab @bradylabs]

I've got a postdoc position open in my lab. Do you work on moss, single cell transcriptomics or plant developmental genomics? Consider applying for this position - more here: https://t.co/NmTs0EgI2S