Abigail Neininger-Castro, PhD

Applications Devlopment Data Scientist, ONI | PhD, Burnette Lab | she/her | interests include microscopy image analysis, crafts, and cells | 🌈🔬🎨

[Abigail Neininger-Castro, PhD @Neininger_AC]

Incoming! A thread on the Burnette Lab's latest preprint, introducing sarcApp: an automatic sarcomere analysis software! https://t.co/bDL0ACMoEV

[Abigail Neininger-Castro, PhD @Neininger_AC]

@boujhari Your hair is magnificent!!

[Abigail Neininger-Castro, PhD @Neininger_AC]

@BojingJia @SiebelScholars @UCSDMedSchool @UCSDJacobs @ucsd_mstp Congratulations, Blair!

[Abigail Neininger-Castro, PhD @Neininger_AC]

@kelseypinckard Ouch!! So glad he's okay!!

[ONI @oniHQ]

ONI is leading the way in scientific innovation, empowering #curiousminds to explore new ideas. Our cutting-edge #superresolution technology reveals the hidden details of the microscopic world.

Where will your curiosity take you next? ✨🔬
https://t.co/5D1ioz3VsO

[Abigail Neininger-Castro, PhD @Neininger_AC]

@ZacharyWhiddon1 No way! Awesome news, congrats and best of luck!! Welcome to SD!!

[Abigail Neininger-Castro, PhD @Neininger_AC]

@benjaminbarad Thank you!

[Abigail Neininger-Castro, PhD @Neininger_AC]

My turn: Academia and I are undergoing a conscious uncoupling. I gave Academia most of my twenties, until I learned that it didn’t love me back. Due to these irreconcilable differences, I am moving on to a new position as an image analyst in mid-May!

[Abigail Neininger-Castro, PhD @Neininger_AC]

Above all else, I will continue to re-work my experiments and hypotheses about life and what is important to me. In the meantime, keep a look out for new software coming soon from my post-doc for MERFISH data visualization!

[Abigail Neininger-Castro, PhD @Neininger_AC]

If you even have an inkling you'd enjoy this course, DO IT!!! Easily the most valuable 2 weeks of my life, and it completely transformed my research and career path.

[Jan Funke @janfunkey]

How can machine learning help you to analyze your microscopy images?

Find out at the "Deep Learning for Microscopy Image Analysis" course at the @MBLScience in Woods Hole from Aug 21-Sep 5!

Applications are due 🚨 May 18 🚨

Read on for more! 👇

https://t.co/zuPyW4LbOh

[Dylan Burnette @MAG2ART]

So this happened! Congratulations Zach Sanchez!!!!! @EntoSanchez @CellBiology

[Abigail Neininger-Castro, PhD @Neininger_AC]

@benjaminbarad Congrats!!! Amazing news, they are lucky to have you!!

[Abigail Neininger-Castro, PhD @Neininger_AC]

Happy BPS day 1 to those who are celebrating this year! Catch me at anything related to single molecules, cardiac structure, or super resolution imaging. See you there! #BPS2023

[Drug Discovery News @DrugDiscovNews]

A marriage of stunning microscopy images and a passionate pursuit for answers hallmark Dylan Burnette's story.

Read @MAG2ART's interview with Stephanie DeMarco to learn about his research into heart cell development and growth:
https://t.co/r8QzaH4dtF

[Kelsey Pilewski, Ph.D. @PilewskiKelsey]

SO excited to share this (hugely collaborative) study! @IG_lab

We discovered #HIV/#HepC cross-reactive #antibodies with broadly neutralizing and Fc-mediated anti-viral activity. Somatic hypermutation plays a critical role in developing this unique reactivity. ⬇️⬇️⬇️⬇️⬇️

[Abigail Neininger-Castro, PhD @Neininger_AC]

Wow!! Amazing work by my dear friend @PilewskiKelsey. Cross-reactive antibodies are my new favorite topic! Turns out, these antibodies Dr. Kelsey isolated can react with both HIV and HCV, and one even with other viruses 🤯Check it out!!

https://t.co/oGNa9xSMuK

[Abigail Neininger-Castro, PhD @Neininger_AC]

Now, we have only gone through a few of the many figures in the paper. There are a lot of experiments we did to test the accuracy and feasbility of sarcApp, but I will save that for another thread later today :) (11/11)

[Abigail Neininger-Castro, PhD @Neininger_AC]

Incoming! A thread on the Burnette Lab's latest preprint, introducing sarcApp: an automatic sarcomere analysis software! https://t.co/bDL0ACMoEV

[Abigail Neininger-Castro, PhD @Neininger_AC]

All of this software is open-source and written in python: check out my github to download it! Also email/DM me if you have questions: I'm happy to help and am looking for feedback! https://t.co/Vdf1UfVNcU (10/)