OHSUCompBio

[Kyle Ellrott @kellrott]

The newest GDC data release includes RNA fusion calls made by methods selected as part of the DREAM SMC-RNA challenge (https://t.co/e8Q2YJSwFs)! The best programs benchmarked by this @DR_E_A_M challenge are now being used to help analyze projects like #TARGET from @theNCI

[OHSUCompBio @OHSUCompBio]

Cancer genome study reveals big window for early detection https://t.co/ABtDWGpgG1

[Young Hwan Chang @QBI_Lab_OHSU]

QBI Lab #NeurIPS2019 #CompBio #OHSU
I will meet you there soon after #Grant #FinalGrading

[Jeremy Goecks @jgoecks]

Really interesting article discussing how dogs really do love us as more than just a food source, with a bit of genomics as well—there are mutations associated with "exaggerated gregariousness" in people and dogs
https://t.co/XLD5qbxmya

[Jiarui Ding @JiaruiDing]

We (with Aviv Regev) want to share with you our preprint scPhere(https://t.co/r7usEWKQY3), a deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces @humancellatlas

[OHSU Knight Cancer Institute @OHSUKnight]

Today is #WorldPancreaticCancerDay. Inspiring young philanthropist Avi Gupta has donated more than $10,000 of his Teen Jeopardy! winnings to the Knight Cancer Institute to help fight this disease. Your gift can impact cancer research: https://t.co/qXmsZ66GtH #InspiredBy

[OHSU Knight Cancer Institute @OHSUKnight]

Tonight: Join us at the November #OHSUKnightSchool to learn more about SMMART (Serial Measurements of Molecular and Architectural Responses to Therapy), including what makes this approach unique, how it's working and what's next: https://t.co/VNU8W4KTZH

[OHSU Knight Cancer Institute @OHSUKnight]

“I never dreamed that the tumors would be reduced and that there would be nothing new.”
-SMMART patient Beth Shia

Our SMMART clinical trial platform is profiled in this @GreatBigStory video highlighting OHSU’s collaboration with @MicronTech.

Learn more: https://t.co/Sbej1lWCD4

[OHSU Knight Cancer Institute @OHSUKnight]

“Joe reminds me of the importance of treating each day as a gift and finding joy in everything we do. He looks at problems — even life-threatening problems — as temporary setbacks, never as defeats.”
–Dr. Kevin Billingsley

Learn more: https://t.co/E80VkbSaPW #InspiredBy

[Jeremy Goecks @jgoecks]

The carpentries fill an essential role in today's computational science ecosystem by providing lessons in using key software tools and data analyses. Also a great example of providing in-person and online computational training.

[OHSU Knight Cancer Institute @OHSUKnight]

“I’m fortunate I’m alive. If my husband had taken a different path, I wouldn’t be here today.” - Jane Gray

The Knight Cancer Institute's Dr. Joe Gray has a personal motivation to ensure that SMMART cancer therapy works: his wife.

https://t.co/I6JZ97zmzg

[Young Hwan Chang @QBI_Lab_OHSU]

Chang Lab group photo at Allen Institute

[Jeremy Goecks @jgoecks]

Great article about how data science/machine learning is impacting the financial sector. Some of same trends are happening in biomedicine. As always, the key question is—what is the goal or being optimized for? And is that goal/optimization a good thing? https://t.co/bAez8ZPXdv

[Young Hwan Chang @QBI_Lab_OHSU]

FAI symposium @ Stanford "enhance" "augment" not "replace"

[Genome Biology @GenomeBiology]

Open letter from @kellrott, @justin_guinney and co, that looks back at recent DREAM M2D challenges to explore how reproducibility can be improved, including protecting sensitive data in the cloud https://t.co/R2pRlxMwrJ

[Sean Maden @MadenSean]

Ecstatic to report I passed my qual exam this month, and now I'm an official Ph.D. candidate @OHSUCompBio! Many thanks to my professors, exam committee, and mentors, including @AbhiNellore and @thompson_lab!! Hard work gaining this permission to work even harder ;^)

[Young Hwan Chang @QBI_Lab_OHSU]

Congrats Geoff & Erik: two abstracts have been selected to be presented at the Frontier of AI-Assisted Care (FAC) Scientific Symposium, Stanford, CA (Sept 18-19): https://t.co/m2irDiSGt3 @OHSUCompBio

[National Cancer Institute @theNCI]

For more about the NIH's Genotype-Tissue Expression (GTEx) project, here's a 2017 article from the #CancerCurrents blog: https://t.co/atxmufUHya @NIHDirector @NIH

[Dr Shannon McWeeney 🇺🇦 is on BlueSky & Mastodon @WonderMixTape]

Honored to join these amazing speakers for #OHSUKnightSchool on Feb. 19 to discuss how we are leveraging genomics, technology and data to improve #cancer care & outcomes for our patients and to empower them. Free event - register at https://t.co/fmOfrwg5bj